Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01131 ATGGGAAAAGCTGCAAAAAGGTATGCAGTGGTGACCGGATCAAACAAAGGAATTGGATTCGAGATAGTAAGGCAGTTAGCTTCAGCTGGAATCAATGTGGTGCTTACAGCAAGAGACGAGAAAAGGGGTCTTCAAGCATTAGAAACACTCAAATCCTTTGGTCTATCCGATTTTGTTGTCTTTCATCAACTTGATATTGCTGATGCTTCAAGTGTAGCCTCTCTTGCAAATTTTGTCAAGTCCGAATTTGGAAAACTTGATATTCTGGTTAACAATGCAGGGATTATTGGAACTATAATTCATGACAAAGAGTTATTTAATCTAGCTATCATCAACCGTGGGGCATTATCAGAAGATAATAGAAGAAAGGCAGTGACTCAAACATATGAGTTAGCTGAAGAATGCTTGCAAACAAATTATTATGGAGCTAAAATAACTTCTGAATCACTTCTGCCACTCCTAAAGTTATCCGATTCACCAAGAATTGTGAATGTATCATCAACTTTAGGGCAGTTAGAGAGCTTAAAAAATGAATGGACTAAAAAAGTCTTTAGTGATGTTGATAACCTAACCGAAGAGAAAGTGGACGAAGTATTGAAGAAGTTTCTAGAAGATTTCAAAGAAGGTTCATTGGAAAGCAAAGACTGGCCTAAAACTGGTGGTGCTTATGTCTTATCTAAAGCTGCTATGAATGCTTATACAAGAATTATTGCTAAGAATTTTCCGACTTTGTGTGTCAATAGTATTTGCCCCGGTTATGTCATTACTGATATAACTGGCAATACTGGTAAATTAACTGCCGAAGAAGGCGCTGCTAGTGTTGTGAAGCTAGCACTACTTCCCAATGGTAGTCCTTCTGGTCAATTCTATATCAGGACTAAGGTGTCTTCCTTCTGA 897 0.379 MGKAAKRYAVVTGSNKGIGFEIVRQLASAGINVVLTARDEKRGLQALETLKSFGLSDFVVFHQLDIADASSVASLANFVKSEFGKLDILVNNAGIIGTIIHDKELFNLAIINRGALSEDNRRKAVTQTYELAEECLQTNYYGAKITSESLLPLLKLSDSPRIVNVSSTLGQLESLKNEWTKKVFSDVDNLTEEKVDEVLKKFLEDFKEGSLESKDWPKTGGAYVLSKAAMNAYTRIIAKNFPTLCVNSICPGYVITDITGNTGKLTAEEGAASVVKLALLPNGSPSGQFYIRTKVSSF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01131 298 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 298 - -
Tsu08g01131 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 284 IPR036291 -
Tsu08g01131 298 Pfam short chain dehydrogenase 8 173 IPR002347 -
Tsu08g01131 298 CDD carb_red_PTCR-like_SDR_c 7 298 IPR045313 GO:0016616
Tsu08g01131 298 Gene3D - 2 298 - -
Tsu08g01131 298 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 298 - -
Tsu08g01131 298 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Tsu08g01131 298 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Tsu08g01131 298 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Tsu08g01131 298 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Tsu08g01131 298 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Tsu08g01131 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Tsu08g01131 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 242 IPR002347 -
Tsu08g01131 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01131 Tsu-Chr8 12444137 12449096 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01131 7 259 Acyl Lipid Metabolism Gene Families AT1G63380 25.000 2.91e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01131 K15095 - gmx:100801677 427.557