Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01123 ATGGAAAATGCAAAAGAAAGatATGCTGTTGTTACGGGATCAAATAAAGGGATAGGATTGGAAACTGTTAAAAGATTAGCTTCAAATGGAATTAAAGTTGTTCTTACATCTAGGAATCAAAAAAGAGGGATTCAAGCTTTTGAGAAATTGAAGAAAGAAtttagtttttgtaattttgttgtttttcatcaACTTGATGTTACTGATCCTTTTAGTATTTCATCATTGGTTGAATTTGTTAAGACTCAGTTTGGAAGACTTGATATCTTGGTGAATAATGCAGGAATCAATGGTTTCAACACAGATGAGATTGTAGAACCAATTATTAATTGGAGGGAATTAAGTCAAACTTATGAGATGGCTGAAAAATGCATAATAACAAATTACTATGGTGCTAAAGAAACTACTGAGGCTTTCCTTCCTCTTCTTCAATTATCTGATTCACCTGTCATTGTTAATGTTTCTTCTGCAGCAGGACTATTAAAGTACATATCAAATGAATGGGCACATAATGTATTAGATGATACAGAAAATCTAACAGAAGATCTAATAGATGAAGTACTGAAAGAGTTTCTAAAAGACTTCAAACAAGATTCACTTGAAAACAAGGGTTGGCCAACATATCTAAGTTCTTATACACTCTCAAAAGCAGCAGTGAATTCCTACACAAGACTTTTAGCTTATAGACATCCAAATATGTGTATTAATTGTGTATGTCCTGGTTTTGTTAAAACAGATATGACTAAAAACACAGGTGATTTATCTGTTGAAAATGGTGCTGCTAGTGTTGTAAGATTAGCATTACTTCCTAGTGGTTCTTCTACTTCTGGTCATTTCTTTGCTCGTCATGATTTAACAGTTCATGGGAAACTGCATCACTTTCTAAACTTCATTTGGCTACTGTTGATCAAGATGGCAAACAACTTTGCTTACAAGATCCTAATTCATCTAATTCATCCGTATGCACTAGTAACAGGTGCTAACAAAGGAATTGGTTATGGAATATGTAAGAAATTAGCTTCAAGTGGTGTTATGGTGGTGCTTACAGCCAGAAATGAGAAAAGAGGTTTGGAAGCtgtagaaaaattgaaagactTAGGTCTCTCTGACTTTGTGGTTTTTCATCAACTTGATGTTACTGACCCTACAAGTGTTACTTCTTTAGCTGAATTCATGAAAACCCAATTTGGAAAACTTGATATCTTGGTAAACAATGCTGGAATTCCTGGAGCACATGTGGACAGCAAGGCTATGGCTGGTGCTAACATTgaAAAAGGTGGCCAAATTGATTGGAGTAAAGTACTAACTGAGACCTATGAACAAGCTGAAGCAGGtattaaaacaaattactaTGGAGCCAAGGAATTAACCAAAGCACTTATTCCCCATCTCCAGCTTTCAAACTCACCAAAAATTGTCAATGTCTCTGCTTCCATGGGAAAGTTAGAGAAAATTCCAAATGGATGTCCTAAGGAAGTATTAAGTGATGTTGAAAATCTTActgaagaaaaaattgatgaagtTTTGAATCAATTTCTAAAGGATTTTAAAGAGGGTTCACTAGAAAACAAAGGTTGGCCTATTCATTTGTCTGCATACATTATCTCAAAAGTTGGTCTTAATGCCTACACAAGGGTTATGGCTAAAAGGTATCCATCAATATGCATCAATGCTGTTTGTCCTGGTCATGTGAAAACAGATACAAACAATACAGGTTATTTAACACCTGATGAAGGTGCTGAATCAATTGTGAGGTTGGCATTGCTATGTGATGGTAGTCCTTCTGGTCTCTTTTTCATTAGAAATGAAGAGAAACCATTTTGA 1824 0.3366 MENAKERYAVVTGSNKGIGLETVKRLASNGIKVVLTSRNQKRGIQAFEKLKKEFSFCNFVVFHQLDVTDPFSISSLVEFVKTQFGRLDILVNNAGINGFNTDEIVEPIINWRELSQTYEMAEKCIITNYYGAKETTEAFLPLLQLSDSPVIVNVSSAAGLLKYISNEWAHNVLDDTENLTEDLIDEVLKEFLKDFKQDSLENKGWPTYLSSYTLSKAAVNSYTRLLAYRHPNMCINCVCPGFVKTDMTKNTGDLSVENGAASVVRLALLPSGSSTSGHFFARHDLTVHGKLHHFLNFIWLLLIKMANNFAYKILIHLIHPYALVTGANKGIGYGICKKLASSGVMVVLTARNEKRGLEAVEKLKDLGLSDFVVFHQLDVTDPTSVTSLAEFMKTQFGKLDILVNNAGIPGAHVDSKAMAGANIEKGGQIDWSKVLTETYEQAEAGIKTNYYGAKELTKALIPHLQLSNSPKIVNVSASMGKLEKIPNGCPKEVLSDVENLTEEKIDEVLNQFLKDFKEGSLENKGWPIHLSAYIISKVGLNAYTRVMAKRYPSICINAVCPGHVKTDTNNTGYLTPDEGAESIVRLALLCDGSPSGLFFIRNEEKPF 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01123 607 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 286 - -
Tsu08g01123 607 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Tsu08g01123 607 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Tsu08g01123 607 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Tsu08g01123 607 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Tsu08g01123 607 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Tsu08g01123 607 Pfam Enoyl-(Acyl carrier protein) reductase 202 253 - -
Tsu08g01123 607 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 321 590 IPR036291 -
Tsu08g01123 607 CDD carb_red_PTCR-like_SDR_c 7 280 IPR045313 GO:0016616
Tsu08g01123 607 CDD carb_red_PTCR-like_SDR_c 321 607 IPR045313 GO:0016616
Tsu08g01123 607 Pfam short chain dehydrogenase 322 482 IPR002347 -
Tsu08g01123 607 Pfam short chain dehydrogenase 8 164 IPR002347 -
Tsu08g01123 607 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Tsu08g01123 607 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Tsu08g01123 607 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Tsu08g01123 607 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 318 604 - -
Tsu08g01123 607 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 286 IPR036291 -
Tsu08g01123 607 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 318 604 - -
Tsu08g01123 607 Gene3D - 1 288 - -
Tsu08g01123 607 Gene3D - 316 607 - -
Tsu08g01123 607 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01123 Tsu-Chr8 12348042 12390384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01123 322 407 Miscellaneous Gene Families AT2G29150 38.636 5.64e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01123 K15095 - qsu:111996010 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01123 08 12348042 12390384 Tsu08g01123 08 12348042 12390384 ECH