Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01122 ATGGCAGAAGCAACAAAAAGGTATGCAATTGTTACAGGAGCAAACAAAGGAATAGGATTTGCAGTATGCAAACAATTGGCTTCTGAAGGGATCACTGTTGTGCTTACTGCAAGAGATCAAAACAGAGGTCTTGAAGCTGTTCAGAAATTGAAACAGCTTTCTCTGCCTGGCCTTGTGGTTTTTCATCAACTTGATGTCACAGATCATGCAAGTATAAGATCATTTGTAGATTTTATTCAAAACCAATTTGGAAAACTTGATATCTTGGTAAACAATGCTGGAATTTCTGGAGCACAAGTGGACGGTGAGGCTCTGGCTGCTACAGTGGCAAATGGTGGCCAGATTGATTGGAGTAAACTAATCACTCAAAGTTATGAACAAACTGAAGCAGGTATTAAAACAAACTATTATGGAGCCAAGGAATTAACCAAAGCACTTATTCCCCTTCTCCAGCTTTCAACCTCTCCAATAGTTGTCAATGTTTCTTCATCTATGGGAAAGTTGGAGAAAATTCCAGATGGATGGCCTAAGGAAGTACTAAGTGATGTCGAAAACCTTACAGAGGAGAAAATTGATGAAGTTTTGAATCAATTTCTAAAGGATTTTAAAGAGGGTTCATTAGAAAACAAAGGTTGGCCTATTAGTGAAATGGCTACATACATTATCTCAAAAATTGCTCTAAATGCCTACACAAGGGTTGTGGCTAGAAAGTATCCGTCAATATGCATCAATGCGGTTTGTCCTGGCTTTGTAAAAACCGATATAAACTACAATATAGGTCATCTAACACCCGATGAAGGCGCTGAATCAATCGTGAGGTTGGCATTGTTACCTGATGGTGGTCCTTCTGGTCTCTTTTTCGttagaaaagaagagaaaccATTTTGA 888 0.3806 MAEATKRYAIVTGANKGIGFAVCKQLASEGITVVLTARDQNRGLEAVQKLKQLSLPGLVVFHQLDVTDHASIRSFVDFIQNQFGKLDILVNNAGISGAQVDGEALAATVANGGQIDWSKLITQSYEQTEAGIKTNYYGAKELTKALIPLLQLSTSPIVVNVSSSMGKLEKIPDGWPKEVLSDVENLTEEKIDEVLNQFLKDFKEGSLENKGWPISEMATYIISKIALNAYTRVVARKYPSICINAVCPGFVKTDINYNIGHLTPDEGAESIVRLALLPDGGPSGLFFVRKEEKPF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01122 295 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 295 - -
Tsu08g01122 295 Gene3D - 2 295 - -
Tsu08g01122 295 CDD carb_red_PTCR-like_SDR_c 7 295 IPR045313 GO:0016616
Tsu08g01122 295 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 1 295 - -
Tsu08g01122 295 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 280 IPR036291 -
Tsu08g01122 295 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Tsu08g01122 295 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Tsu08g01122 295 PRINTS Glucose/ribitol dehydrogenase family signature 220 239 IPR002347 -
Tsu08g01122 295 PRINTS Glucose/ribitol dehydrogenase family signature 239 256 IPR002347 -
Tsu08g01122 295 Pfam short chain dehydrogenase 8 168 IPR002347 -
Tsu08g01122 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Tsu08g01122 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Tsu08g01122 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 220 239 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01122 Tsu-Chr8 12327393 12331408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01122 2 97 Acyl Lipid Metabolism Gene Families AT1G63380 35.714 1.04e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01122 K15095 - gmx:100803877 447.973