Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01094 ATGGAGCATTTAGATGACGAGGAGGCATCATCGAATAATGCTGATGAAGTAGAAGTCACTAATACTCCACTGATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTAGAAAATATCATTCGGTCCTTAAGGCTGTCTCAAAAAGATGGAGAGACTTAGTTTGCAGCGAAGAGTGGCTTTATTATCGTAGGAAGCATAAACTTGATGAGACATGGATCTATGCTTTGTGCAGGGACAAATTGGATCACATTTGCTGTTATGTATTGGATCCAACCTCATCAAAAAAATCTTGGAAGCTTATTCACGGGCTTCCGCATCACATTGTTAGAAGGAAAGGCATGTGTTTTGAAGCTTTGGAAAATAAGCTCTTCTTATTGGGTGGCTGTGGCTGGTCTGAAGGTCCTACTGACGAGGTTTATTCATACAATGCTTCCTCAAACTCTTGGGCTGAAGCTGCTTCCTTGTCAACTGCTAGGTGCTACTTTTCTTGTGAAGTTATGGACGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTATTATGATCGTCAATCATGGGATACTTTTGATCCATACAAAAATGCTTGGACATCTCACAAAGATCCTCCATACACAGATGCTTGGACATCTCACATAGATCCTCATATCTTTCCCGAAATTGAAGATTCAGTAGTTATGGATGGTAAAATATACATCCGATGCCGCAAATCTTCTGTAATAACATCTCATGTGTATGCTTTCGTATACGAACCATCAAGTGACTCATGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAGAGGTCCTGCAGTTGTTGTCAACGGAATCCTTTTTGTTTTGGATCAAAGTTCGGGAACTAGGCTAACAATGTGGCATAAAGAGAGACGCGAGTGGATACCGGTTGGGAAGTTGTCACCATTGCTTACAAGACCACCCTGCCAACTTGTTGCAGTTGGTaaaatcatttatattattGGGAAAGGGCCTAGCACTGTGACTGTTGATGTTGGTGATATTGGAAATATGGGAAGGGTGATGGTGGGTTCTTCTATACCCAAATTAGTTTCTGATTACAATGTCATTAGTTGCAAATGCTTGTCAATCTGA 1128 0.4087 MEHLDDEEASSNNADEVEVTNTPLICGLPDDISLLCLARVPRKYHSVLKAVSKRWRDLVCSEEWLYYRRKHKLDETWIYALCRDKLDHICCYVLDPTSSKKSWKLIHGLPHHIVRRKGMCFEALENKLFLLGGCGWSEGPTDEVYSYNASSNSWAEAASLSTARCYFSCEVMDEKLYAIGGIGSNYYDRQSWDTFDPYKNAWTSHKDPPYTDAWTSHIDPHIFPEIEDSVVMDGKIYIRCRKSSVITSHVYAFVYEPSSDSWQHADADMVSGWRGPAVVVNGILFVLDQSSGTRLTMWHKERREWIPVGKLSPLLTRPPCQLVAVGKIIYIIGKGPSTVTVDVGDIGNMGRVMVGSSIPKLVSDYNVISCKCLSI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01094 375 Pfam F-box domain 26 61 IPR001810 GO:0005515
Tsu08g01094 375 Pfam Galactose oxidase, central domain 120 160 - -
Tsu08g01094 375 Pfam Kelch motif 163 187 IPR006652 GO:0005515
Tsu08g01094 375 SUPERFAMILY F-box domain 23 105 IPR036047 GO:0005515
Tsu08g01094 375 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 9 349 - -
Tsu08g01094 375 SMART fbox_2 28 68 IPR001810 GO:0005515
Tsu08g01094 375 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 9 349 - -
Tsu08g01094 375 SUPERFAMILY Kelch motif 88 336 IPR015915 GO:0005515
Tsu08g01094 375 SMART kelc_smart 127 174 IPR006652 GO:0005515
Tsu08g01094 375 Gene3D - 83 349 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01094 Tsu-Chr8 11962210 11965647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01094 28 316 Miscellaneous Gene Families AT4G33900 24.430 8.64e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01094 - - gmx:100798211 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01094 08 11962210 11965647 Tsu08g01094 08 11962210 11965647 ECH