Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01092 ATGAACCTTaaggaagaagaagTATTAGAGTTTCTTGGACGCGTTCCACTACTACAGAGGTTACCTAGCTCGTCTATAAGGAAGATTTCAGAACTTGTGGTTGTTAAACACTATgAGCGAGGGGAGTATGTTGCTCGCGAGGATGAACCAGGAGATGGCGCTTACTTCATATGGGATGGAGAGGCTGAGGTTGTTGGATCTGTTAGTGCCAATGATGAAAATCGTCCAGAGTTCCAGTTGAATAAATATGACTATTTTGGTTGTGGTTTGTCAAATACAGTCCACAGCGCAGATGTTGTTGCTTTGTCTAAGCTAACATGCTTGGTGCTTCCCCGTGAGCACTTGGCACTGCTATGGCCAAAGTCTATACAGAGAGCCGAAAAATGTCCTGAGAGACGCTCAGATATGGAGAATATATTGCAATTGGAACCTTTAAAGGTAGATACCTTTCAAGGAATCACTCCTCCGGGCGCTCCAAATTTTGGAAAGGTGTTTGGGGGACAGCTGGTTGGACAGGCACTAGCTGCAGCATCAAAATCTGTTGACTGTCTTAAGTTACTTCATAGTATGCATGCCTATTTTCTTCGTATAGGAGACTTAAACATGCCTATTATATATCAAGTCCATCGGCTCCGCGACGGAAAGAACTTTGCTACCCGGAAAGTAGATGCAATGCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCAGAGAGAAGAACTAGCATTTGACCACCAGGAAGTAGCCATGCCATCTGTCGCTGCACCAGAAACGCTTCTGCCATTAGAAGAGCTACGGGAGAGACGTCTAACCGACCCTCGCCTGCCAATAATTTATCGGAATAAAGTGGCTAAAACTGAGTTCGTTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAGAATTGcaacaaatatgacaaaatctCCTCCCAGTTTGAGATACTGGTTTCGTACAAAGGGAAAACTTTCAGATGATCAGGCCTTGCATAGGTGTGTTGTGGCATATGCTTCAGATTTAATATTTCTTCAAGTAAGTTTGAATCCACATCGTGGGAGAGGTTTCAGGGCACGTGGTGTTAGTCTGGATCATGCAATGTGGTTTCACCGACCCTTAAAAGCTGATGAGTGGGTGCTATTTGAGATCTTCACTTCCAGTGCCTATGAAGCACGCGGTTTTGTCATAGGTCAAATGTTCAATCAGAAGGGACAGCTTCTTGTAACATTAATTCAAGAAGGTCTAACCAGGAATGCTAGTTCCGAAATTTCAGACGTAAAATCTAAGTTGTAA 1296 0.4275 MNLKEEEVLEFLGRVPLLQRLPSSSIRKISELVVVKHYERGEYVAREDEPGDGAYFIWDGEAEVVGSVSANDENRPEFQLNKYDYFGCGLSNTVHSADVVALSKLTCLVLPREHLALLWPKSIQRAEKCPERRSDMENILQLEPLKVDTFQGITPPGAPNFGKVFGGQLVGQALAAASKSVDCLKLLHSMHAYFLRIGDLNMPIIYQVHRLRDGKNFATRKVDAMQKGNVIFTLLASFQREELAFDHQEVAMPSVAAPETLLPLEELRERRLTDPRLPIIYRNKVAKTEFVPWPIEIRFCEPRIATNMTKSPPSLRYWFRTKGKLSDDQALHRCVVAYASDLIFLQVSLNPHRGRGFRARGVSLDHAMWFHRPLKADEWVLFEIFTSSAYEARGFVIGQMFNQKGQLLVTLIQEGLTRNASSEISDVKSKL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01092 431 Gene3D Jelly Rolls 2 129 IPR014710 -
Tsu08g01092 431 PANTHER ACYL-COA THIOESTERASE 53 431 IPR003703 GO:0006637|GO:0047617
Tsu08g01092 431 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 134 242 IPR029069 -
Tsu08g01092 431 CDD Thioesterase_II_repeat1 315 416 - -
Tsu08g01092 431 ProSiteProfiles cAMP/cGMP binding motif profile. 17 87 IPR000595 -
Tsu08g01092 431 Gene3D - 131 421 IPR042171 -
Tsu08g01092 431 PANTHER ACYL-COA THIOESTERASE 53 431 - -
Tsu08g01092 431 CDD CAP_ED 17 128 IPR000595 -
Tsu08g01092 431 CDD Thioesterase_II_repeat2 148 240 - -
Tsu08g01092 431 Pfam Thioesterase-like superfamily 159 416 - -
Tsu08g01092 431 Pfam Cyclic nucleotide-binding domain 36 116 IPR000595 -
Tsu08g01092 431 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 250 419 IPR029069 -
Tsu08g01092 431 SUPERFAMILY cAMP-binding domain-like 7 121 IPR018490 -
Tsu08g01092 431 SMART cnmp_10 17 137 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01092 Tsu-Chr8 11944186 11954190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01092 3 431 Acyl Lipid Metabolism Gene Families AT1G01710 63.869 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01092 K01068 - gmx:100803260 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01092 08 11944186 11954190 Tsu08g01092 08 11944186 11954190 ECH
Tsu04g01745 04 18633266 18641012 Tsu08g01092 08 11944186 11954190 PCT