Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01090 ATGTCACTTATCTGTGGGTTTCCTCTACTTGAGTGTGTTTATTGTTTGGGTTGTACTCGTTGGGTTTGGAAAAAATGTCTGTACACTGCAGGATATGAGAGTGAAAATTGGGGTTTGGCTACTGCAGAAGAGTTTGAGCCTATACCTCGAATTTGTCGAATAATCTTAGCTGTTTACGAAGATGATATTCGTAATCCGCAGTGGGCTCCCGAAGGTGGTTATGGCATTAATCCTGATTGGATTGTCTTGCGGAAGGATTACGGGGATAACCAAGGTTGTGTTACTCCGTATATGATATACCTTGATCATGATCGTGGTGAGGTTATACTGGCTGTTAGTGGACTTAATTTAGGAAAGGAAAGTGATTATGCAGTTTTGCTTGATAACAAACTTGGACAGACAGAATTTCATGGTGGATATGTTCATAATGGGTTATTGAAGGCAGCAGATTGGGTTTTTGATGCGGAATGTGACGTTCTGAGGAAGCTAATAGCAGAACATCCAACTTATATGCTGACATTTATGGGACATTCGCTCGGGGCTGGGGTGGTGGCCTTATTGACAATGCTAGCGATTCATAATCGCGACAAATTAGGGATACAAAGAAACAAGATAAAATGCTATGCGATTGCTCCTGCTCGATGCATGTCTCTCAATTTGGCCGTAAGATATGCCGATGTGATCAATTCTATCGTACTACAGGATGATTTTTTACCTCGAACAACCACTGCGGCGGAAACCCTCTACAAGTCACTTTTATgCTGGCCTTGTTTATTGTGTCTCCTGTGCTTAAAAGATACTTGCACACTGGAGGAGAAGAAGCTTAGAGATCCAAGGCGTCTGTACGCACCTGGTCGTCTCTATCACATTGTCGAGCGAAAGCCCTTCAGGTTTGGAAGATATCCACCAGTTGTTAGGACAGCAGTACCTGTTGATGGGAGGTTTGATCATATAGTTATTTCTTGCAATGCAACTTCTGATCATGCCATCCTTTGGATAGAGAGGGAATCACGACGTGCTCTCGATTTAATGCTAGAGAAAGATCGGCATATGGAGATTCCAGCAGAGCAGAAGATGGTGAGGCAAGAATCACTAGCTCGCGAACACAGTGAAGAGTATCGTGCAGCTCTTCGGAGGGCAGTTGCTTTGGATATTCCTCAAGCATACTCACCTTCTTCATACGGAACATTTCATGAAATTGATGTTGAGGAGGATTCTGGAAGATCTAGTGACAAAGGCTCCTCCTTGTCTCATAACAAACGATCCGAGAGTTGGAATGAATTTGTTGGGCGCATGTTTGACGTGGACGACACAGGTCAGATGGTATTCAAAAAGACAAATCcttaa 1347 0.4313 MSLICGFPLLECVYCLGCTRWVWKKCLYTAGYESENWGLATAEEFEPIPRICRIILAVYEDDIRNPQWAPEGGYGINPDWIVLRKDYGDNQGCVTPYMIYLDHDRGEVILAVSGLNLGKESDYAVLLDNKLGQTEFHGGYVHNGLLKAADWVFDAECDVLRKLIAEHPTYMLTFMGHSLGAGVVALLTMLAIHNRDKLGIQRNKIKCYAIAPARCMSLNLAVRYADVINSIVLQDDFLPRTTTAAETLYKSLLCWPCLLCLLCLKDTCTLEEKKLRDPRRLYAPGRLYHIVERKPFRFGRYPPVVRTAVPVDGRFDHIVISCNATSDHAILWIERESRRALDLMLEKDRHMEIPAEQKMVRQESLAREHSEEYRAALRRAVALDIPQAYSPSSYGTFHEIDVEEDSGRSSDKGSSLSHNKRSESWNEFVGRMFDVDDTGQMVFKKTNP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01090 448 CDD Lipase_3 44 240 - -
Tsu08g01090 448 Pfam Lipase 3 N-terminal region 9 74 IPR005592 GO:0016042
Tsu08g01090 448 Gene3D alpha/beta hydrolase 39 252 IPR029058 -
Tsu08g01090 448 SUPERFAMILY alpha/beta-Hydrolases 43 243 IPR029058 -
Tsu08g01090 448 Pfam Lipase (class 3) 119 242 IPR002921 GO:0006629
Tsu08g01090 448 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 446 - -
Tsu08g01090 448 MobiDBLite consensus disorder prediction 401 421 - -
Tsu08g01090 448 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 446 - -
Tsu08g01090 448 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01090 Tsu-Chr8 11902425 11907939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01090 1 445 Miscellaneous Gene Families AT4G00500 65.924 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01090 - - gmx:100800227 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01090 08 11902425 11907939 Tsu08g01090 08 11902425 11907939 ECH