Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01060 atgTCTTCTCCAAGCAAGCGACGAGAGATGGACCTGATGAAATTgATGATGAGTGATTACAAGGTGGAGATGATTAACGATGGAATGCAAGaattttatgttcattttcatGGACCCAATGAAAGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGAGTTGAGCTACCGGATGCTTATCCTTATAAATCTCCTTCGATAGGCTTCATCAATAAGATTTATCATCCTAATGTTGATGAGATGTCAGGATCGGTTTGTCTTGATGTTATCAATCAGACCTGGAGCCCCATGTTCGATCTTGTCAATGTATTTGAGGTGTTTCTGCCTCAACTCCTTCTGTATCCCAATCCATCGGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGCGACAGACCTACTTATGACCAAAGGGTTAAAGAGTACTGTGAGAAGTATGCCAAACCAGAAGACATTGGAGCTGCCACAGAAGAGAAATCCAGTGATGAAGAAGACGAGGAGCTAACTGAAGACGAATATGATTCAAGTGATGAACAGATTGCTGGTAAAGCAGACCCTTAG 561 0.4135 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYQGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPTYDQRVKEYCEKYAKPEDIGAATEEKSSDEEDEELTEDEYDSSDEQIAGKADP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01060 186 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Tsu08g01060 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 186 - -
Tsu08g01060 186 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Tsu08g01060 186 SUPERFAMILY UBC-like 4 148 IPR016135 -
Tsu08g01060 186 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Tsu08g01060 186 MobiDBLite consensus disorder prediction 157 175 - -
Tsu08g01060 186 CDD UBCc 7 143 IPR000608 -
Tsu08g01060 186 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Tsu08g01060 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 1 3 186 - -
Tsu08g01060 186 MobiDBLite consensus disorder prediction 146 186 - -
Tsu08g01060 186 SMART ubc_7 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01060 Tsu-Chr8 11603180 11606908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01060 3 150 Miscellaneous Gene Families AT3G17000 23.602 7.66e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01060 K10576 - gmx:548025 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01060 08 11603180 11606908 Tsu08g01060 08 11603180 11606908 ECH