Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01059 ATGATTGATGATGGACAGAACGTTGATTTATATAAGAAGCTGTTGACTGTGGTTGAGGGGAAAGGTGGGTTTGAAGCTGTTTGTAATGGTGAGTTGTGGGATTTAGTTGGGGAAGAATGTGGGTTAGGTGTGAATGTTGGTTCATCTGTGAAACTTGTTTTCAGTAAGTATAAGAGTTTTTTGGAGTCATGTTTGAAGAAATCTGGTTGTGGTAAGGTGTCTGATGAGTGTGGTTTGATGGGGTTTGAGGCTGATTTGAAAGAGTTGTTGTTGTCGGGTCAGGCTGAGATTGCGGTGGCTAGAGAGGGGGTTAAGGCTGGAGTTGATGGTGCTAATGCGGTGAAGAGTGGGGAGAAAGATGTCGGAAAGTTCGGTGAGGGTAATGGTGATGCAATGCAGGGAGTGGAAGAGGCTGATGGAGGGAAAAAGTCTGCTGAGACGACGGCTAATGTATGTGGTGCGGTGAAGATTGGTGCGTCTGGATTGTTTAATGTAGGCGAGACTCGTGATGGTGATAATGTAGGGGATTCGTCTGGTGGTAATGTAGGGGGTCTTAAGAGGAAGAGAGAGTCTTTGTCTAATTTGTTGAGTTGGGTTACTAGTGTCGCGAATAACCCTTGTGATCCTGAAATTGGTTCGTTGCCTGAAAAGTCGAAGTGGAAGTCTTACAGTGATCAGGAGGCTTGGAAGCGGGTTTTGCTGTATCGAGAGGCTGTGTTTCACAAGAAACAATCAAGCATTGAGCAGCAGAATTGGCAGAGTCAGAAGATGCACCCTTCCATGTATGATGATCCCGCTCCGACTGCCTACAATCTTAGGGAGAGGGTGAAACGTGAGAAGAAAccattatttgaaaataaaaaaccaggTTCGCAAAGCTCGTCAGGAAATTCGGACAGAACCTCAAGTCCTCGTGCTGAGAAACAGTCGGTTGATTCTGCGACATCAAAGCGCATCCTTGTGGGGCCAAATCATCAAGCTGATGTTCCTGAGTGGACTGGTCCGATTCTGGAAAGCGATCCTAAGTGGCTCGGGACCCAAATATGGCCATCGGTAGCAGCTAATTCTCGATTTCTTATTGAAAGGGATCCTATAGGAAAGGGACGACAAGATTCATGTGGCTGTGCAGTTCCAGGTTCTGTCGAGTGTGTCAGATTCCACATTGCTGAGAGAAAGTCTAAAGTTGAGCTGGAGTTAGGCGTTGCTTTTTACCACTGGCATTTCGATAAAGTCGGTGAAGATGTTCGACGTTTTTGGACCTATGAAGATGAGAAGAAATTCTGGGAAGTCATACAGTCAAACCATCCATCAACTGAAAGATATTTTTGGGATCACATTTTCCGAAAATTTCCTAACAAGAGCAGGGAAACTTTGGTTAGCTACTACTTTAATGTCTATCTCTTGCAGCGCAGAGCATATCACACTAGGCATACACCTGATGACATCGATAGCGATGACGATGAATCACAATCTGCATTGAGGAATGTTTTTGGACATCAGACACAGAATTCGTTATTGAGCCCGAAGAAGCCAGCTAAGAAGGGAAAACAGtaa 1554 0.4447 MIDDGQNVDLYKKLLTVVEGKGGFEAVCNGELWDLVGEECGLGVNVGSSVKLVFSKYKSFLESCLKKSGCGKVSDECGLMGFEADLKELLLSGQAEIAVAREGVKAGVDGANAVKSGEKDVGKFGEGNGDAMQGVEEADGGKKSAETTANVCGAVKIGASGLFNVGETRDGDNVGDSSGGNVGGLKRKRESLSNLLSWVTSVANNPCDPEIGSLPEKSKWKSYSDQEAWKRVLLYREAVFHKKQSSIEQQNWQSQKMHPSMYDDPAPTAYNLRERVKREKKPLFENKKPGSQSSSGNSDRTSSPRAEKQSVDSATSKRILVGPNHQADVPEWTGPILESDPKWLGTQIWPSVAANSRFLIERDPIGKGRQDSCGCAVPGSVECVRFHIAERKSKVELELGVAFYHWHFDKVGEDVRRFWTYEDEKKFWEVIQSNHPSTERYFWDHIFRKFPNKSRETLVSYYFNVYLLQRRAYHTRHTPDDIDSDDDESQSALRNVFGHQTQNSLLSPKKPAKKGKQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01059 517 CDD ARID 4 57 - -
Tsu08g01059 517 MobiDBLite consensus disorder prediction 270 286 - -
Tsu08g01059 517 MobiDBLite consensus disorder prediction 478 492 - -
Tsu08g01059 517 ProSiteProfiles ELM2 domain profile. 317 351 IPR000949 -
Tsu08g01059 517 MobiDBLite consensus disorder prediction 478 517 - -
Tsu08g01059 517 SMART ELM2_2 319 370 IPR000949 -
Tsu08g01059 517 MobiDBLite consensus disorder prediction 287 320 - -
Tsu08g01059 517 ProSiteProfiles ARID domain profile. 1 66 IPR001606 GO:0003677
Tsu08g01059 517 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 514 - -
Tsu08g01059 517 SUPERFAMILY ARID-like 4 59 IPR036431 GO:0003677
Tsu08g01059 517 Gene3D - 1 69 IPR036431 GO:0003677
Tsu08g01059 517 MobiDBLite consensus disorder prediction 245 333 - -
Tsu08g01059 517 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 514 - -
Tsu08g01059 517 MobiDBLite consensus disorder prediction 493 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01059 Tsu-Chr8 11591411 11594198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01059 - - mtr:MTR_8g028905 603.594