Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01053 ATGCTCAATTTCAAAAAGCAGCTCCCTTTCCCTCCATTCCCTTTCCCATTCTTCACAGAATGCTTCTGTTTCTCTTCTCACCAACCCCATTCATTGAACTCCATAACCCGACTTAGAGCTTCTATGCCAATTCCTGATCAAACCCATTTCAAAGACCCTAACATAGTTCATTTGTTCTGTTCCAAAGCCCTCAAAATCTCAGCCAAAAAGGGCTATCTTCCTGAAGGAAAACAGTTACATGCCCATTTAATAAAGTTTGGATTTTGTCAAGTTCTTTCATTACAAAATCAGATTTTGAGTGTTTATCTTAAATGTAAAGAAACTGAATATGCACAGAAACTGTTTGATGAATTGCCTGTGAGAAATGTTGTGTCGTGGAATATTATGATTCGCGGTATTGGATCATGTGACTGTGAAAAGGGATTTAATTGTATGGaactttgtttttgttattttagaaGGATGTTGTTGGAAATGGTGGCTCCTGATTATATAACTTTTAATGGTTTGATTTGTTTATGTGCCGAGTTTCATGATATTGAGATGGGAATTCAGTTGCATTGTTTTATAGTGAAAGTTGGAtttgatttggattgttttgttgCTTGTGCTCTTGTTGATTTATATGCAAAATGTGGTTTTGTTGAGAATGCAAGAAGGGTTTTTTGCGTTTCTCCAGTTAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTATGCATTCAATTGTTTACCAGAAGAGGCTTTTCGCATGTTCAATTTGATGCGGTTGGATGTTGCGAATGGGGACGAGTTCACTTTTAGTAGCTTGCTTAGTGTAATAAGTGATGATGCTTTAGAATATTATGATTTTGGAAAGCAAATTCACAGTCTTGTTCTGAGACAGTCATTTGATTCAGATGTTTTAGTGGCTAGTGCTTTGATAAACATGTatgccaaaaacaaaaatatgattgaTGCACATAGAGTATTCGATGAGATGTCAATTCGAAATGTTGTGGCATGGAACACCATAATTGTTGGGTGTGGAAATCACAGTAATGGCAATGAGGTTATGAAGCTTTTCAGAGAGATGCTTCATGAAGGGTTTCTTCCCGATGAACTGACTATTTCCAGCATAATTAGTTCATGTGGCTATGCTTCTGCCATTACCGAAACACTGCAAGCGCATGCCTTTGCTGTTAAATTATCATGTCAAGGTTTTTTATCCGTTGCGAATTCTTTGATAAGTGCTTACTCCAAGTGTGGTAGCATTACTAGTGCATTCAAATGTTTTGAATTAACTTCAAAGCCTGATCTCGTTACATGGACTTCATTGATATATGCATATGCATTCCATAGTCTTGCCAAAGAAGCAACTGAGATGTTTGAGAAGATGCTATCTTGTGGCATTAAACCAGATCGAATAGCTTTTCTCGGTGTTCTCTCGGCTTGTTCTCATCGTGGGCTAGTGACAAAGGGACTTCACTACTTCAAATTAATGACTGATGTGTATCATATTGTTCCCGATTCAGAACATTACACTTGTCTTGTTGACCTTTTAGGAAGATATGGTCTTATAAATGAagcttttgaaattttgaaatcaaTGCCAATCGAAGCTGAATCAGATACCTTAGGAGCATTTATTGGATCTTGTAAACTACATTCAAATATGGAATTGGCTAAATTAGCTGCAGAAAAACTCTTCATCATCGAGCCAGAAAAGAGCGTAAACTATGCAGTGATGTCTAACATTTATGCTTCACAGAAACATTGGTGTGATGTGGAAAGAGTTCGAAACACGATGGAAGAAAAACATGATGCAAAAGTTCCAGGTTATAGTTGGATAGAGATTGGTAATCAAGTTCATTCATTTGTATCCAATGATAAATCCCACCCTTATGTTTTAGAAATGTATGTTACATTAAACATGCTGCTTAGGTCAATGAAGGAACAAAATGGTATATATTTGTAA 1959 0.3527 MLNFKKQLPFPPFPFPFFTECFCFSSHQPHSLNSITRLRASMPIPDQTHFKDPNIVHLFCSKALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCKETEYAQKLFDELPVRNVVSWNIMIRGIGSCDCEKGFNCMELCFCYFRRMLLEMVAPDYITFNGLICLCAEFHDIEMGIQLHCFIVKVGFDLDCFVACALVDLYAKCGFVENARRVFCVSPVRDLVMWNVMISCYAFNCLPEEAFRMFNLMRLDVANGDEFTFSSLLSVISDDALEYYDFGKQIHSLVLRQSFDSDVLVASALINMYAKNKNMIDAHRVFDEMSIRNVVAWNTIIVGCGNHSNGNEVMKLFREMLHEGFLPDELTISSIISSCGYASAITETLQAHAFAVKLSCQGFLSVANSLISAYSKCGSITSAFKCFELTSKPDLVTWTSLIYAYAFHSLAKEATEMFEKMLSCGIKPDRIAFLGVLSACSHRGLVTKGLHYFKLMTDVYHIVPDSEHYTCLVDLLGRYGLINEAFEILKSMPIEAESDTLGAFIGSCKLHSNMELAKLAAEKLFIIEPEKSVNYAVMSNIYASQKHWCDVERVRNTMEEKHDAKVPGYSWIEIGNQVHSFVSNDKSHPYVLEMYVTLNMLLRSMKEQNGIYL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01053 652 Pfam E motif 550 612 IPR046848 -
Tsu08g01053 652 PANTHER OS07G0578800 PROTEIN-RELATED 40 632 IPR045215 GO:0003723|GO:0009451
Tsu08g01053 652 PANTHER OS07G0259400 PROTEIN 40 632 - -
Tsu08g01053 652 Pfam PPR repeat 507 531 IPR002885 -
Tsu08g01053 652 Pfam PPR repeat 407 427 IPR002885 -
Tsu08g01053 652 Pfam PPR repeat 435 465 IPR002885 -
Tsu08g01053 652 Pfam PPR repeat 231 257 IPR002885 -
Tsu08g01053 652 Pfam PPR repeat family 331 378 IPR002885 -
Tsu08g01053 652 Gene3D Tetratricopeptide repeat domain 175 288 IPR011990 GO:0005515
Tsu08g01053 652 Gene3D Tetratricopeptide repeat domain 289 395 IPR011990 GO:0005515
Tsu08g01053 652 Gene3D Tetratricopeptide repeat domain 45 148 IPR011990 GO:0005515
Tsu08g01053 652 Gene3D Tetratricopeptide repeat domain 403 632 IPR011990 GO:0005515
Tsu08g01053 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Tsu08g01053 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Tsu08g01053 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
Tsu08g01053 652 TIGRFAM PPR: pentatricopeptide repeat domain 231 257 IPR002885 -
Tsu08g01053 652 TIGRFAM PPR: pentatricopeptide repeat domain 306 333 IPR002885 -
Tsu08g01053 652 TIGRFAM PPR: pentatricopeptide repeat domain 435 468 IPR002885 -
Tsu08g01053 652 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01053 Tsu-Chr8 11522741 11524699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01053 98 646 Glycoside Hydrolase AT3G49170 33.925 3.89e-106 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01053 - - gmx:100778378 942.954