Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01020 atgGGATTGGGGAGTGAGAGTTTTCAACTTCTATCCAAGATTGCAACCAATGACCAACATGGTGAAAATTCTCCATACTTTGATGGGTGGAAAGCATATGAGAAAAACCCATTTCACCCTACAAAAAATCCTCATGGTGTAATCCAGATGGGTCTTGCTGAAAATcagcTCTGCTTTGATCTAATAGAAGAATGGATAAAGAATAATCCCAAGGCTTCAATTTGCACTCCAGAAGGAATGCATAATTTCAGAGAAATTGCTAACTTTCAAGACTATCATGGGTTGCCAGAGTTTACAAGTGCTATGGCAAAATTTATGTCAAAAGTGAGAGGTGGTAGGGTGAGATTTGATCCAAACCGTATATTGATGAGTGGAggagcaacaggagcaaatgaaTTAATCATGTTTTGTTTGGCTGATCCTGGAGATGCTTTTCTAGTTCCTACCCCTTACTATCCAGGATTTGTTCGGGACTTGTGTTGGAGAACTAAGGTTCAATTAATTCCTGTCCATTGTGATAGCTCTAACAATTTCAAGATAACAAGAGAAGCACTTGAAGTAGCATACAACAAAGCACAAGAAGATAACATCAATGTAAAAGGATTGATCATAACAAACCCTTCCAACCCATTAGGCACAACCCTAGACAAAGAGACACTAAGGAGTCTTATAAGTTTCATTAATGAGAAAACAATTCATTTAGTTTGTGATGAAATCTATGCAGCCACAGTTTTCACATCTCCAACTTATGTAAGTGTTAGTGAAGTCATACAAGAAATGAATTGCAACCTTGATCTCATTCACATTATTTATAGTTTATCAAAAGACTTAGGGTTCCCTGGTTTTAGGGTTGGGATAGTTTATTCATACAATGATCAAGTGGTGAATTGTGGAAGAAAAATGTCAAGCTTCGGATTAGTCTCGTCTCAAACTCAACATATGCTTGCTTCAATGCTTTGTGATGAAAAATTTGTTGACAAGTTTCTTTTAGAGAGTTCAAGAAGATTATTTAAAAgacatgaaaaatttaaaaagggACTTGAAGAGGTTGCGGTCAGTCGATTTCCAAGTAATGCGGGACTTTTTTGCTGGATGAACTTGAAAAGTTTGCTTAAAGAGGATACAATTGAAGAAGAGTTGAAGCTTTGGCGCGTGATTATTAATGAGGTGAAGCTTAATGTGTCACCGGGGTCCTCTTTTAATTGTTCCGAGGTTGGTTGGTTTAGGGTTTGTATTGctaatattgatgatgaaacaGTTGAAGTTGCATTGAAAAGAATAAGAGAATTTATAGGcaaagaaacaaagaagaaagttGAACAAGTTAAACGTTGGCAACCAAATTTAAGGCTTAGCTTCACTTCAAGGAAGCTTGATGAGACTATTTTGTCACCTCATAATCACATAATCATCTCTCCTCATTCACCACTTGTTAGAGCCACATGA 1446 0.3472 MGLGSESFQLLSKIATNDQHGENSPYFDGWKAYEKNPFHPTKNPHGVIQMGLAENQLCFDLIEEWIKNNPKASICTPEGMHNFREIANFQDYHGLPEFTSAMAKFMSKVRGGRVRFDPNRILMSGGATGANELIMFCLADPGDAFLVPTPYYPGFVRDLCWRTKVQLIPVHCDSSNNFKITREALEVAYNKAQEDNINVKGLIITNPSNPLGTTLDKETLRSLISFINEKTIHLVCDEIYAATVFTSPTYVSVSEVIQEMNCNLDLIHIIYSLSKDLGFPGFRVGIVYSYNDQVVNCGRKMSSFGLVSSQTQHMLASMLCDEKFVDKFLLESSRRLFKRHEKFKKGLEEVAVSRFPSNAGLFCWMNLKSLLKEDTIEEELKLWRVIINEVKLNVSPGSSFNCSEVGWFRVCIANIDDETVEVALKRIREFIGKETKKKVEQVKRWQPNLRLSFTSRKLDETILSPHNHIIISPHSPLVRAT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01020 481 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 272 285 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tsu08g01020 481 Gene3D Aspartate Aminotransferase, domain 1 36 426 IPR015422 GO:0003824
Tsu08g01020 481 Pfam Aminotransferase class I and II 48 427 IPR004839 GO:0009058|GO:0030170
Tsu08g01020 481 CDD AAT_like 88 429 - -
Tsu08g01020 481 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 448 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 266 290 - -
Tsu08g01020 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 298 321 - -
Tsu08g01020 481 SUPERFAMILY PLP-dependent transferases 16 432 IPR015424 -
Tsu08g01020 481 Gene3D - 70 321 IPR015421 GO:0003824
Tsu08g01020 481 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01020 Tsu-Chr8 11210405 11214941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01020 K20772 - gmx:100813347 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01020 08 11210405 11214941 Tsu08g01020 08 11210405 11214941 ECH
Tsu04g02085 04 23058550 23062105 Tsu08g01020 08 11210405 11214941 PCT