Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01001 ATGGGTTCTTTGGATTCAACGATCCCATTGAAGAAAGGGAGTTTATTTGGTACTATTCATAATTCAAGTAAAAAAGATAAACACCCATTTTCTCAAAGGTTTAGATCGAGTTTTTCTCGTTTGTTGTTCAAGAAACTAGATTATGTTCAATGGATTTGTGCTGTTcttgtgtttctttttcttgttgttGTGTTTCAAATGTTTCTTCCTGTTTCGGTTGTGGAAGATTCAGCTGTGAAGATGAATCCTTGGAACTCTTTACCTAAAAGAGAGATGTATGTGTTGGACATTGGTGAGGAGGAAGCTGTTTTTTTGTCTAGGATTTCGGAGAAGTTTAAGGATTTGAATCAGTTGAATCGAACGGGGATGCGGTTTGGTTACAGGAATCCTCAGTTAGCATTGGTATTTGGAGAATTATTGGTTGATTCACAACAATTGTTAATGGTAACAATTACAACAGCTTTGTTAGAGATTGGCTACGGAATTCAGGTATTTTCACTTGAAGATGGACCGGGGCGAAATATGTGGAGAAATTTAAGAGTTCCCATCACTATTATTCATAATCGCAACAAGCCAGACAAAACTGTAGACTGGCTAAACTACGATGGTATAATTGTGAGCTCTCTTGAAGCAAAAAACGCCTTTTCTTGTTTTTTGCAGGAACCATTCAAGTCTGTACCACTTATATGGATAATTCATGACAGTGCTCTTGGTTACCGTTCAAGACAATATACTGCTACTGGGCAGATTGAACTTTTGAATGATTGGAGAAAAGCTTTCAATCGTTCATCTGTTGTTGTCTTTCCAAACTATGCGTTGCCGGTGATCTACTCCACATTCGATACTGGAAACTTTTATGTCATTCCTGGTTCCCCTGCTGAAGCGTTAGAAGCAGATGCATTTATGGCATTGCAGAAAGATAAACTGCGCATTAGTATGGGCTACAGTCCAGAAGATGTCATTATCGCAATTGTCGGCAGTCAGTTTTTGTACAAAGGGATGTGGTTGGGGCATGCCGTTGTTTTGCAGGCTTTATCACCACTTTTGGCAGACTTCCCTTTAAGCAAAGATAATACCACTGCACAACTACGGATCATTGTTCATAGTGGAGAGTTAACAAATAACTACACTGTGGCTCTCGAGACGATTGCACGAAGCTTGAAATATCCAAAAGGAACCATAGAGCTTATAGCTGGAGATTTGAATTCAGAGTCTGTTCTCGGCACGGCAGATGTTGTGATATACGGATCCTTGCTTGAAGAACAATCTTTTCCAGAGATTTTGATTAAAGCCATGTGCTTTGAGAAACCAATTATTGCTCCTGATATTTCTATGATCAGAAAATATGTTGATGACAGGGTGAATGGCTATCTTTTCCCTAAGGATAATATTAGAGTTCTTAGACAAATCATGTTAGAGGTGATctcaaaaaggaaaatatcaCCGTTAGCTCGGAACATTGCCTCAATGGGAAGAAGAACTGCTAAGAACCTTATGGTTTCCGAAGCAATTGATGGATATGCAACTTTACTTCAGAATATTCTCAAGCTTCCATCAGAGGTTATTCCTCCTAAGGCTGTTTCAGCAATATCCCCCCATGTTAAAGAAAAGTGGCAGTGGCATTTGCTTGAAGCAGTTCCAAATTCGACATATCAAAATAGGGTATTGAGAAGCAACACGTTTTTAGATAAATACGAAGACCGTTGGAATCATTCACGAAAAGATAGATCGTCTACTGCTGTTGATGATAATGACTCATTTGTATATATGATATGGgaagaagaaaaacatattCAGATGGCTATTACCAAAAAAAGGATAGAGGATGAAGAGTTGAGGGATAGAACAGAGCAGTCACACGGAACATGGGAGGAAGTATATCGAAATGCGAAGAAAGCTGATAGGTTAAAGAATGATTTGCACGAAAGGGATGATGGAGAGCTTGAGCGGACGGGACAACCTCTTTGCATTTATGAACCGTACTCCGGGGAAGGATCCTGGCCTTTTCTACACCAAAGATCTCTTTATCGCGGAGTTTCCCTGTCCAGCAAAGGTAAAAGGCCCGGGAAAGATGATTTTGACGCCCCTTCTCGTCTTCCATTGCTTAACAGTGCTTACTATCGAGATGTCCTTGGTGAATTTGGATCCTTCTTTGCCATTGCAAACCGGATTGATCGTTTACACAAAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGGCTTCTTTGTCCAGAGCTGCTGAAAATGCATTGTTAGACGCCATCCAATCCAAAAGGAATGGGGACGCCCTATATTTCTGGGTGCGGATGGATACGGATCCGCGAAACCCTTCACAGACGGACTTTTGGTCATTTTGTGATGGCATTAATGCAGGAGGTTGCAAGTAA 2400 0.3967 MGSLDSTIPLKKGSLFGTIHNSSKKDKHPFSQRFRSSFSRLLFKKLDYVQWICAVLVFLFLVVVFQMFLPVSVVEDSAVKMNPWNSLPKREMYVLDIGEEEAVFLSRISEKFKDLNQLNRTGMRFGYRNPQLALVFGELLVDSQQLLMVTITTALLEIGYGIQVFSLEDGPGRNMWRNLRVPITIIHNRNKPDKTVDWLNYDGIIVSSLEAKNAFSCFLQEPFKSVPLIWIIHDSALGYRSRQYTATGQIELLNDWRKAFNRSSVVVFPNYALPVIYSTFDTGNFYVIPGSPAEALEADAFMALQKDKLRISMGYSPEDVIIAIVGSQFLYKGMWLGHAVVLQALSPLLADFPLSKDNTTAQLRIIVHSGELTNNYTVALETIARSLKYPKGTIELIAGDLNSESVLGTADVVIYGSLLEEQSFPEILIKAMCFEKPIIAPDISMIRKYVDDRVNGYLFPKDNIRVLRQIMLEVISKRKISPLARNIASMGRRTAKNLMVSEAIDGYATLLQNILKLPSEVIPPKAVSAISPHVKEKWQWHLLEAVPNSTYQNRVLRSNTFLDKYEDRWNHSRKDRSSTAVDDNDSFVYMIWEEEKHIQMAITKKRIEDEELRDRTEQSHGTWEEVYRNAKKADRLKNDLHERDDGELERTGQPLCIYEPYSGEGSWPFLHQRSLYRGVSLSSKGKRPGKDDFDAPSRLPLLNSAYYRDVLGEFGSFFAIANRIDRLHKNAWIGFQSWRATARKASLSRAAENALLDAIQSKRNGDALYFWVRMDTDPRNPSQTDFWSFCDGINAGGCK 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01001 799 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 144 512 - -
Tsu08g01001 799 CDD GT4_PimA-like 148 512 - -
Tsu08g01001 799 PANTHER GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN 1 799 - -
Tsu08g01001 799 Gene3D Glycogen Phosphorylase B; 297 497 - -
Tsu08g01001 799 PANTHER GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN 1 799 - -
Tsu08g01001 799 Pfam Glycosyl transferases group 1 380 485 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01001 Tsu-Chr8 11019381 11026660 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01001 - - gmx:100807455 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01001 08 11019381 11026660 Tsu08g01001 08 11019381 11026660 ECH