Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00990 ATGAATGCTTCTGATTTTGATATGGTTAACATAGGTGATGAAGCTGTTAATAGCAATGATGATCCAAACCCGGGCATGGATTTCTCTGAAGCTGATGTTAGAGTTAAAACCCTACATATCAGTTCTCCTATTTTGGCCGCAAAAAGCCCTTTCTTCTATAAGCTTTTCTCGAATGGGATGAGGGAATCAGAGCTGAGACATGTCACCCTCAGAATTAATGCCTCTGAGGAAGCTGCTCTCATGGAGCTACTGAATTTTATGTATAGCAATAACTTGAATGTTAGGACCGCACCTGGTTTGCTTGATGTGTTGATGGCTGCAGATAAATTTGAAGTTGCCTCATGCATGAGACTTTGTAGTCGGTTGTTGCGAAATTTGACCATGACACCCGAATCTGCGTTGCTTTACCTGGAGCTGCCTTCTAGTGTCTTAATGGCTGATGCAGTTCAACCTTTGACCGATGCTGCAAAACAGTATCTTGCTGGCCGCTATAAAGATATAACCAAGTTCCAGGAAGAGGTTATGAACTTGCCGTTAGCTGGAATAGAGGCAATATTATCTAGTGATGATCTCCAGGTTGCATCAGAAGACGCTGTATATGACTTTGTGTTGAAATGGGCAAGACACCAGTACAGCAATCTTGAAGAAAGGAGAGAAGTTCTAGGTGCACGGCTTGCACGATTAATCCGCTTCCCTTATATGACCTGCCGAAAGCTTAAGAAGGTCTTAACCTGTAGTGATTTTGAACATGATGTTTCATCCAAGCTTGTACTTGAAGCCCTGTTTTTCAAGGCAGAGGTTCCACATCGCCAACGGTCACTAGCCGCAGAAGAGCCTGCTTTCTCAAGCCGTCGTTTCTTGGAGAGGGCATACAAATATCGTCCCGTCAAGGTGGTTGAATTTGAACTTCCCCGCCAGCAGTGTGTAGTGTACTTGGATCTAAAGCGCGAGGAGTGTTCCAATTTGTACCCATCCGGCCGTGTTTATTCACAGGCATTCCACTTGGGTGGACAGGGATTTTTCCTTTCAGCACATTGTAACATGGATCAACAAAgctctttccattgctttggTCTGTTTTTGGGAATGCAGGAAAAGGGATCCGTCAGCTTCACCGTGGACTATGAATTTGCTGCAAGGTCAAGACCAACAGAGGAGTTTGTTAGCAAATACAAAGGCAATTACACATTCACAGGTGGCAAAGCTGTTGGCTACAGAAACTTGTTTGCGATTCCATGGACTTCATTCATGGCTGAGGATTGTCTTTACTTCATCAACGGTGTTCTACATCTCAGGGCCGAGCTCACCATCAGACATTCAAATTTGTAA 1329 0.4349 MNASDFDMVNIGDEAVNSNDDPNPGMDFSEADVRVKTLHISSPILAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNNLNVRTAPGLLDVLMAADKFEVASCMRLCSRLLRNLTMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAGRYKDITKFQEEVMNLPLAGIEAILSSDDLQVASEDAVYDFVLKWARHQYSNLEERREVLGARLARLIRFPYMTCRKLKKVLTCSDFEHDVSSKLVLEALFFKAEVPHRQRSLAAEEPAFSSRRFLERAYKYRPVKVVEFELPRQQCVVYLDLKREECSNLYPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFTVDYEFAARSRPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDCLYFINGVLHLRAELTIRHSNL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00990 442 ProSiteProfiles BTB domain profile. 36 96 IPR000210 GO:0005515
Tsu08g00990 442 SMART BACK_2 142 244 IPR011705 -
Tsu08g00990 442 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN POB1 9 439 - -
Tsu08g00990 442 SUPERFAMILY TRAF domain-like 325 437 - -
Tsu08g00990 442 Pfam BTB/POZ domain 36 124 IPR000210 GO:0005515
Tsu08g00990 442 Gene3D - 159 265 - -
Tsu08g00990 442 SMART BTB_4 4 127 IPR000210 GO:0005515
Tsu08g00990 442 Gene3D Potassium Channel Kv1.1; Chain A 26 147 IPR011333 -
Tsu08g00990 442 Pfam BTB And C-terminal Kelch 150 242 IPR011705 -
Tsu08g00990 442 CDD BTB_POZ_ZBTB_KLHL-like 31 110 - -
Tsu08g00990 442 SUPERFAMILY POZ domain 37 124 IPR011333 -
Tsu08g00990 442 PANTHER OS02G0260700 PROTEIN 9 439 IPR045890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00990 Tsu-Chr8 10827213 10829787 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00990 - - gmx:100817612 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00990 08 10827213 10829787 Tsu08g00990 08 10827213 10829787 ECH