Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00949 ATGGCGAGAGTTAAGCACAAACCTCGTCCCGGTACACGCACTCCAAATGAGGCTcaggaaaagaagaaaagaagaaataagCCTGGAACAGTAGCACTTCGTGAGATTCGTAAATTTCAAAAAGCTGTTAACTTTCTTATACCTTCTGCTCCGTTTGTAAGATGTGTCAGACATATTACAAACCAACTATCAACCCAAGTCTCGCGCTGGACGGCTGAAGCCTTACAAGCACTTCAGGAGGCAGCTGAGGACTATCTGGTTCGTATGTTTGAATGTGGAATGCTCTGTGCACTTCACGCAAGGCGTGTTACCCTTATGAAAAAGGATATTGAGTTGACACGTAGGCTTACCGGAATAGGAAGGCCTTGGTGA 372 0.4301 MARVKHKPRPGTRTPNEAQEKKKRRNKPGTVALREIRKFQKAVNFLIPSAPFVRCVRHITNQLSTQVSRWTAEALQALQEAAEDYLVRMFECGMLCALHARRVTLMKKDIELTRRLTGIGRPW 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00949 123 MobiDBLite consensus disorder prediction 1 30 - -
Tsu08g00949 123 PANTHER HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12 9 123 - -
Tsu08g00949 123 Pfam Core histone H2A/H2B/H3/H4 2 116 IPR007125 GO:0003677
Tsu08g00949 123 SMART h35 18 121 IPR000164 GO:0000786|GO:0003677|GO:0030527
Tsu08g00949 123 PANTHER HISTONE H3 9 123 IPR000164 GO:0000786|GO:0003677|GO:0030527
Tsu08g00949 123 SUPERFAMILY Histone-fold 8 119 IPR009072 GO:0046982
Tsu08g00949 123 PRINTS Histone H3 signature 99 120 IPR000164 GO:0000786|GO:0003677|GO:0030527
Tsu08g00949 123 PRINTS Histone H3 signature 83 99 IPR000164 GO:0000786|GO:0003677|GO:0030527
Tsu08g00949 123 PRINTS Histone H3 signature 18 39 IPR000164 GO:0000786|GO:0003677|GO:0030527
Tsu08g00949 123 PRINTS Histone H3 signature 42 59 IPR000164 GO:0000786|GO:0003677|GO:0030527
Tsu08g00949 123 MobiDBLite consensus disorder prediction 10 30 - -
Tsu08g00949 123 Gene3D Histone, subunit A 2 119 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00949 Tsu-Chr8 10403272 10408893 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00949 K11253 - gmx:100811872 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00949 08 10403272 10408893 Tsu08g00949 08 10403272 10408893 ECH