Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00943 atGACATTTTGCATTTTCTCTAAGCACCAAATCTTTATGTATAACCTTTCACCTTTTCAGCATCTTAATCCTTATTCTCATCAAAACCTTAAAACAAACATGTTACCTAGAAGCCTTTCACCACCCACTTCAATTTCTCTTCCAACATTAGATACCCAATTTTTCCCTCCTTCTTctatttcattttcatcacAAAACAATTCTCCATTTTTTCACCCTTCTGTTGAGTTAAGTAAACAAAGAACTTTGAACTCTGTCAAGGAATTGCATGCCCAGATgattaaaaaccctaaaaatgaaaactttattGCAATGGATGATACCATGATGAGATACTATTTAGAATTTGGTGATTTTGATTCAGCAATTAGGGTTTTCTTTGTGGGTTTTACAAGAAATTATCTTTTATGGAATTCTTTTCTTGAGAAATTTGAGAGTTTTGGAGGTAACCCATTTGAGATTTTGGTTGTTTTCAATGAATTGTATAGTAAAGGAGTTGAATTTGATAGCAAAGTTTTCacctttgttttgaaaatttgcTTAGCTTTAAGGGTTTTGTGTTTTGGTTTGGAAGTTCATggttgtttgattaaaaaaggGTTTCTTGTTGATGTGCATTTGAATTGTGCATTGATTAATTTCTATGAGAAGTGTTTGAGTATAGATAAAGCAAATCAAGTATTTCATGAGACTTCATATAAAGAAGATTTTTTGTGGAATACAATAGTTATGGCAAATTTGAGGAGTGAGAAGTGGAAGAATGCTTTAGAACTTTTCGGCAGCATGCAGAGAGTTTCGGCCAAAGCCACTGTTGGCACCATTGTCAAGATGTTACAAGCTTGTGGAAAGTTGAGAGCTTTCGATGAAGGGAAACAGATTCATGGGTATGCTTTAAGATTTGGACTAGTTTCGAATACTTTAGTTTGCAATTCAATTATTAGTATGTACTCTAGAAATAGTAGATTTGAACTAGCTAGAGCGGTTTTTGATTCGATGGAGGATTGTAGTCGTAACTTATCGTCTTGGAACGCGATTATTTCGAGTTATGCGGTTGATGGTTGTTTGAATGATTCATTGGATAATACCATCAAAGAAATGGAGTGTTCCGGTATTAAACCGGATGTTATAACTTGGAATTCGGTTTTGTCGGGTTATGTTCATCAGGGATTATTTGAAAAGGTTCTCACTAGTTTTCGGAGCCTGCATACTGCAGGCTTCAAGCCGGATTCATGCTCGGTAACCAGTGCTCTACAGGCGGTTACTGAATTGGGCTTATTTAAAATAGGGAAAGAAATCCATGGTTACATGATGAGAACTAATCTTAACTATGATGTCTATGTTTGTACTTCATTGGTGGATATGTatgttaagaatgattgcttaGATAAGGCTCACGAAGTGTTCCGTCATGCAAAGAACAAAAATGTTTACGCTTGGAATTCTTTGATATCAGGTTACTCCTTCAAAGGCCTGGTTGGTGATGCCGAAAAACTATTGAATCAGATGGAGGAGGAAAGGATTAAACCTGATTTGGTGACATGGAATGGTTTGATTTCAGGTTATTCAATACAAGGCCGGACAGAGGAAGCTTTGACTGTGATAAATCGGATCAAGAGTTCCGGAATTACTCCGAATGTGGTGTCGTGGACTTCTTTGATATCAGGATGTTCTCAAAACAAGAAGTACTTCGATGCCTTACGGATTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACGCGACAACAATTTGCAACTTACTTTGTGCTTGTGCAGGCCCGTCGCTGTTGAAGAAAGGTGAAGAGATACACTGCTTTAGTATGAAACTAGGGTTTGTGGATGATATATACGTTGCAACATCCCTCATTGACATGTATTGTAAGGCAGGGAAATTGAAAGTAGCTTACAATGTTTTCATCAAAGTTCAAAAGAAAACAAGGCCATGTTGGAATTGCATGATGATGGGATATGCTATTCATGGACATGGGGAAAAGGTAATGATTCTTTATGACGAGATGCGTGAAAGATGCATTAAACCTGACGCGATAACGTTCACTGCTCTTCTTTCGGGCTGCAAGAATTCAGGTTTAGTCGATAAAGGATGGAAGTATTTTGATAGTATGCAAGAAGATTACAATATTGTTCCAACAATTGAGCACTACTGTTGCATGGTAGACTTACTTGGAAAAGCTGGTTTTCTCGACGAAGCTTTGGATTTCATCGAAACTATGCCGATTAAGCCAGATGCAAGTATTTGGGGTGCTCTTCTTGCATCCTGcagaaatcacaaaaacattAAGCAAGCAGAGATCGCGGCAAGGAAGCTTTTCAAGTTGGAACCAAATAATTCTGCTAACTATGTTTTAATGATGAATTTATATTCGAGTTTAAACCGATGGAATGATGTGGAGCGCCTTAAAAGCTCAATGACTGTGTTGGCGATGAAAAGTCCGCCTGTTTGGAGCTGGACACAGGTTAATCAGAGTATTCATGTGTTCTCTACAGATGGGAAACCACATCCAGAAGAAGGGGAAATATATTTTGAGCTATATCGATTAATTTCCGAGATACGAAAGCTCGGTTATGTAGCTGATCTCAATTGTGTATTTCAGAACATTGATGACAATGAGAAAGAGAAGATTCTTATGAGTCACACTGAGAAGTTGGCAATGGTATAtggaatgatgaaaatgaaaggTGGATCACCAATTAGAGTTGTTAAGAACACAAGAATTTGTTGCGACTGTCATACAGTAGCAAAGTACATTTCTTTGGCTCGAAATTGCGAGATTTTACTGCAAGATGGTGGCCGTTTTcaccattttaaaaatggaaaatgtgCTTGTAATGATCGTTGGTAA 2862 0.3546 MTFCIFSKHQIFMYNLSPFQHLNPYSHQNLKTNMLPRSLSPPTSISLPTLDTQFFPPSSISFSSQNNSPFFHPSVELSKQRTLNSVKELHAQMIKNPKNENFIAMDDTMMRYYLEFGDFDSAIRVFFVGFTRNYLLWNSFLEKFESFGGNPFEILVVFNELYSKGVEFDSKVFTFVLKICLALRVLCFGLEVHGCLIKKGFLVDVHLNCALINFYEKCLSIDKANQVFHETSYKEDFLWNTIVMANLRSEKWKNALELFGSMQRVSAKATVGTIVKMLQACGKLRAFDEGKQIHGYALRFGLVSNTLVCNSIISMYSRNSRFELARAVFDSMEDCSRNLSSWNAIISSYAVDGCLNDSLDNTIKEMECSGIKPDVITWNSVLSGYVHQGLFEKVLTSFRSLHTAGFKPDSCSVTSALQAVTELGLFKIGKEIHGYMMRTNLNYDVYVCTSLVDMYVKNDCLDKAHEVFRHAKNKNVYAWNSLISGYSFKGLVGDAEKLLNQMEEERIKPDLVTWNGLISGYSIQGRTEEALTVINRIKSSGITPNVVSWTSLISGCSQNKKYFDALRIFSQMQEENVKPNATTICNLLCACAGPSLLKKGEEIHCFSMKLGFVDDIYVATSLIDMYCKAGKLKVAYNVFIKVQKKTRPCWNCMMMGYAIHGHGEKVMILYDEMRERCIKPDAITFTALLSGCKNSGLVDKGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKAGFLDEALDFIETMPIKPDASIWGALLASCRNHKNIKQAEIAARKLFKLEPNNSANYVLMMNLYSSLNRWNDVERLKSSMTVLAMKSPPVWSWTQVNQSIHVFSTDGKPHPEEGEIYFELYRLISEIRKLGYVADLNCVFQNIDDNEKEKILMSHTEKLAMVYGMMKMKGGSPIRVVKNTRICCDCHTVAKYISLARNCEILLQDGGRFHHFKNGKCACNDRW 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00943 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 233 941 - -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Tsu08g00943 953 SUPERFAMILY TPR-like 606 802 IPR011990 GO:0005515
Tsu08g00943 953 Pfam E motif 763 825 IPR046848 -
Tsu08g00943 953 Pfam PPR repeat 620 644 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat 238 264 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat 309 334 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat 376 405 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat 720 744 IPR002885 -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Tsu08g00943 953 Gene3D Tetratricopeptide repeat domain 299 428 IPR011990 GO:0005515
Tsu08g00943 953 Gene3D Tetratricopeptide repeat domain 602 695 IPR011990 GO:0005515
Tsu08g00943 953 Gene3D Tetratricopeptide repeat domain 696 802 IPR011990 GO:0005515
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 446 476 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 649 682 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 477 510 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 683 717 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 376 410 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 308 335 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 547 581 IPR002885 -
Tsu08g00943 953 TIGRFAM PPR: pentatricopeptide repeat domain 512 546 IPR002885 -
Tsu08g00943 953 Pfam DYW family of nucleic acid deaminases 861 953 IPR032867 GO:0008270
Tsu08g00943 953 Gene3D Tetratricopeptide repeat domain 452 601 IPR011990 GO:0005515
Tsu08g00943 953 Gene3D Tetratricopeptide repeat domain 146 284 IPR011990 GO:0005515
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 335 IPR002885 -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Tsu08g00943 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 154 232 - -
Tsu08g00943 953 PANTHER OS05G0586900 PROTEIN 154 232 - -
Tsu08g00943 953 PANTHER OS05G0586900 PROTEIN 233 941 - -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 711 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat family 544 592 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat family 474 513 IPR002885 -
Tsu08g00943 953 Pfam PPR repeat family 649 692 IPR002885 -
Tsu08g00943 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 373 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00943 Tsu-Chr8 10354700 10358510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00943 169 953 Glycoside Hydrolase AT3G49170 30.336 3.25e-124 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00943 - - mtr:MTR_8g027810 1595.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00943 08 10354700 10358510 Tsu08g00943 08 10354700 10358510 ECH