Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00923 ATGGCACCAAGATACAGTCGTGGAAAGGCCAagggagagaagaagaagaaggaagagaaggTTCTTCCTGTTGTCATGGATATTACAGTGAACCTTCCGGATGAAACCAGTGTTGTTCTCAAGcAGGGAATATCAACGGATAGAATAATAGATGTTCGTCGGCTTTTATCAGTGAATACAGAGACGTGTTACATTACCAACTTTTCTCTATCACATGAGATAAGAGGTGTACGTTTGAAGGACACGGTGGACGTGTCCGCACTGAAGCCATGCCTCCTCACTTTAGTTGAAGAGGATTACGATAACGATGGAGCGGTGGCTCACGTGCGAAGACTACTGGACATCGTGGCATGCACCACCAGCTTCGGTCCGTCGTCACCACCGAAGAATGCGGCGGCGAAAGCGAGCAAATCTCAACCGCCACCGGAGAAACAATCACCGAAAGAAGCTGCCACGGCGGACGCAGACGGAGAGATAAGCCACTCGTGCCCTAAGCTTGACAGTTTCTACgagtttttctctctctcaaatcTCACTGCACCTCTTCAATATGTGAAGAAAGCTTCAAAGCGACATGTGGAGGAGATAGCGGAAGAGGATCATCTCTTCTCGCTTGATGTGAAAGTGTGTAATGGGAAAGTGGTGCACGTTGAGGCTTGCAGAAAGGGGTTTTACAGTGTTGGGAAGCAGAGGGTTCTGTGTCACAATCTCGTTGATTTATTGAGACAGATTAGCAGAGCTTTTGACAATGCTTATGATGATCTCTTGAAGGCATTTTCAGAACGTAACAAGTTTGGAAATCTTCCCTATGGCTTCAGATCCAACACGTGGCTTGTTCCTCCTGTTGCAGCACAATCACCAtcattttttcctcttcttccaGTGGAGGATGAAAATTGGGGAGGAAATGGTGGTGGTCTCGGAAGAGACGGAGAGTATGATTTGATTCCTTGGGCCAATAAGTTTTCTTTTATTGCATCTATGCCCTGCAAGACAGCAGAAGAAAGGCAAGCCCGTGATAGAAAAGCATTTCTTCTGCATAGCTTGTTTGTTGATGTTGCCATTTTCAGAGCAATTAAGGCTGTTAAACATGTTTTGGAAGAGCCCAGTTATAGCTGCTCAGCAGCAGAAAATGATATTTACAGCGAGAGAGTAGGTGACTTGAGTGTTAGAGTCTTGAAAGATGGTTCTGTTGCAAGCTGTAAGATTGATTCCAAAATTGATGGAGTTGAAGCTACAGGAGTAAATCAAAAGGATCTAGTCGAACGGAATTTACTGAAAGGGATAACAGCAGATGAAAATACTGCGGCCCATGATACTACAACTTTAGGTGTTGTTTACGTAAGATATTGTGGTTATGTGGTTGTTGTGAAAGTTGAAGGCGAAGTTGATGAAAAAGTCAATACTTCATCTCATCAAAATAATGAATTGTTTGATCAGCCAGAGGGTGGTGCCAATGCACTAAATATTAACAGTTTAAGATTTCTTCTTCACACCCCAGCTCTACCGGAGAACAATAAACAGACGACTGAGATACAATTGTCTGAGAGTGAAGAGCTTGGTGGTGATACAGACACTTTTGTGGAAAATCTGATTAAAAAAAGCCTTGCTAAGCTTGAGGAAGAGGAACTGAGTTCGGACTATTTTGTAAGATGGGAACTAGGTGCGTGCTGGGTACAACATTTGCAAGACCAAAACAATACAGAAAAAGATAAGAAACCATCGTTGGAGAAGGCTAACAATGAAATGAAGGTTGAGGGTCTTGGGAAACCCCTCAAAGCcctcaaaaataataaaaagaaatctgattcaagcaatcCTAATTTTGCATCTGAACATACAAAATCTAATCTCGAGGCTGATAATGCTGCATTATCCTCAAGTGAATCCCAGCATGAAGCTGCGGTAGCTGAAAATGAGCTTGTGTTGAAACAGATGTTATCTGAGGCAGCTTTTACCCGATTGAAAGAATCAGGAACTGGACTTCACTGCAAGTCTATTCAAGATTTGATCGACTTATCTCAGAAATATTACATGGATGTTGCTATCCCAAAACTGGTAGCAGATTTTGGCTCATTGGAACTCTCTCCAGTTGATGGCCGCACGCTAACCGATTTTATGCATACTAGGGGTCTACGAATGCGATCTCTTGGGCATGTTGTCAAGCTTTCTGAAAAACTTTCACATGTGCAATCACTTTGCATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCCTAAGAGCAGTGATTTCTGCTGTTGTTGACAAGGAGAAAATGGCTTCATCAATAGCTGGTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAGAGAAACAGATAAATCATGTGATGTCCACCCTCTTGTGTGGAAATGGCTAGAGCTGTTTTTGAAGAAACGATTTGACTGGGATCTTAACAGGTTGAACTATAAAGATGTGAGGAAATTTGCAATTCTACGTGGCTTGTGTCACAAGGTGGGAATTGAGCTCGTTCCAAGGGATTTTGGCATGGATTCTCCATTTCCCTTCCAAAAAACTGATATTGTTAGCTTGGTCGCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTCCTGGAGTCCTCCAAAACAGCTTTAGACAAGGGAAAGCTTGAAGATGCTGTTACCTATGGGACAAAGGCTCTTGCGAAGCTTGTAGCAGTCTGTGGTCCCTACCATCGGATGACAGCAGGAGCATACAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTAcaatttatcaacaaaaagcTTTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACGGAGCTGGCTCTTAAATATGTGAAGCGTGCTTTATACCTTTTGCATCTGACATGTGGCCCTTCTCATCCAAATACCGCCGCAACTTACATTAATGTGGCTATGATGGAGGAAGGTCTGGGAAATGTACACATTGCTCTCAGATATCTTCACAAAGCATTAAAGTGCAACCAAAAGTTACTTGGTGCAGATCATATTCAGACAGCTGCAAGTTACCATGCAATAGCAATAGCACTCTCGTTGATGGAAGCATATCCATTGAGCGTGCAGCATGAGCAAACAACTTTGCAAATTTTGCGGGCAAAACTTGGCCCTGATGACTTGCGAACACAGGATGCTGCAGCTTGGCTTGAATATTTTGAGTCCAAGGCATTTGAACAGCAAGAAGCTGCTCGAAATGGCACGAGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTAAGTGTGTCGGATCTTCTTGACTACATCAATCCTAATCACGATACCAAAGGGAGAGATGCAGCAGCAAAGAGAAGAAACCAGGTGCGAGCAATATCCTACCAGAACAATGTCTCAGCAAGTTCTGATGAGTCttcaaaagaaattcaaaaagAGGCTTCAGATGAAGAGCTACATATACCTGAAACAGGAGGTAGCGCAGATTCTGAGAATGAGACCAACTCGGCACCTGATCCAGAACCGCCGATTTTAGAAAAGATCTTGGACGAAAAGCCACAAACTTCTAATGACTTATTGTCTGAAGTTCATCCTGATGGAGATGATGGATGGCAATCAGTTCAAAGACCAAGATCAGCTGGCTCATATGGTCGGCGAGTGAAACAAAGACGGGCAACACTTGGCAAAGTTTATAGTTACCAGAAGAATGTGGAAGTTGGCACTGAACAACATCCTTCGGTTAAAAGTGGTAATCAGAATAGTAAGTATTATTTCTTGAAGAAGAGGACAATGCACCATGGGGGTTATGCAGATAATCGTGCTGTGAACATCAGTCAAGGCACTAAATTCGGAAGAAAAGCAGTCAAGGCTGTTGCATACAGGGTCAAGTCTACGCCATCTTCTTCTAAGACCGTTGTAAATGAGACACCAGAAATCGGTGACAAAGAACCTGATTCAATTGATGTTAATCCAGTTAAGACTTCTATAGTCAGTCTTGGTAAAAGTCCATCATACAAGGAAGTAGCCTTGGCTCCTCCTGGGACAATCTCCAAGTTGCAGGTCTATAATCCTCAAAGTGAGATTCCTATTAGTCCTAAACATGATGTTGGAAAACACAAAGAGCAAGATATCGAAGCTCGTAGAAACATCAATCCAACCCCAAAAGAGGCAAATAATGCATTTAAAGAGAAGTCTGATGATTCTTTGTCTGATTCAATAGAAGATTCACAAGATTATACTGTAGTTTCTactgagaagaaagaagaaactcAGTTGAACAAAGTTGTTCAAGATAATTGTGTGACTTTTGAGGGACTTGAATCTGGGGACGTTGAAGCACAAGGAGCTGTTGATAACAGTATAGTGGTTGATGCAGTAGAGAATGTTGTGGACTCTTACAAACAAGAACTTATTGCAAGTAATTTGCCTTGCAGTTTTGAACCTTCTGATAATATAAATTCTAGTCCACGTGGTAGTGAGGATTTAGGCGTCAATTTATTATCACCTACTCAGAGTCAAGCTGGGGGCATCTCCTGTAAGAAATTATCTGCATCAGCAGCGCCATTCAACCCATCACCTGCCATTGCACGCACTGCACCTATTGGCATGAATATGACTCATCCTTCTGGTCCCGGTCCTATTCCAGCTATTGGCCCCTGGCCAGTAAACATGAATGTTCACCCTGGACCTGTGCTACCTGCTGTTAACCCTATGTGTTCCTCTCCTCACCATGCATATCCATCACCTCCAACAACACCAAACATGATGCAGCCATTGCCATTCATGTATCCTCCTTATACTCAACCTCAATCAGTACAAACCAGCAGTCCTTTTCATGCCAATCATTTTGCATGGCAGTGTAATTTGAACCCGGTCATATCTAAGTTTGGTCCTGGTGCTGTTTGGACTGGTTGTCATCCTGTGGAATTTCCTCGTCCAGTACCTATTGTTGAATCAATCCCTGATATCATTTCTGAGCCACAAGTGCAGTCTTATACAGCTGAAAGTCCAAGTTCAGCTTCAGTTCTGCTTGAGGACATTGATAAGGTTGGGGATTCTAATAAAGAGGTAAAAACTTCAGCACCAGAGATGAATGAAGATGGAATGCTGAGAGTTGGTTCAGAAAGtataaaagaaaatggtaatctaAATTTTCCCGGGATCAACAATGCTGGGAACGAACCAAATCAAAATGTTGGCTCAAACAGTAGTGAAACAAACATGGATGATGAGAAAACGTTTAGCATTTTGATTCGTGGAAGAAGAAACCGAAAGCAGACTCTGAGAATGCCAATAAGTTTGCTTACCCGACCCCATGGCTCTCAGTCATTTAAGGTTATCTATAACCGTGTAGTTAGAGGAAATGATTCTCCAAGGTCCATCAATTTCTCTTCTAGTAAACATTGTACAGCTTCTGCTTAA 5475 0.4141 MAPRYSRGKAKGEKKKKEEKVLPVVMDITVNLPDETSVVLKQGISTDRIIDVRRLLSVNTETCYITNFSLSHEIRGVRLKDTVDVSALKPCLLTLVEEDYDNDGAVAHVRRLLDIVACTTSFGPSSPPKNAAAKASKSQPPPEKQSPKEAATADADGEISHSCPKLDSFYEFFSLSNLTAPLQYVKKASKRHVEEIAEEDHLFSLDVKVCNGKVVHVEACRKGFYSVGKQRVLCHNLVDLLRQISRAFDNAYDDLLKAFSERNKFGNLPYGFRSNTWLVPPVAAQSPSFFPLLPVEDENWGGNGGGLGRDGEYDLIPWANKFSFIASMPCKTAEERQARDRKAFLLHSLFVDVAIFRAIKAVKHVLEEPSYSCSAAENDIYSERVGDLSVRVLKDGSVASCKIDSKIDGVEATGVNQKDLVERNLLKGITADENTAAHDTTTLGVVYVRYCGYVVVVKVEGEVDEKVNTSSHQNNELFDQPEGGANALNINSLRFLLHTPALPENNKQTTEIQLSESEELGGDTDTFVENLIKKSLAKLEEEELSSDYFVRWELGACWVQHLQDQNNTEKDKKPSLEKANNEMKVEGLGKPLKALKNNKKKSDSSNPNFASEHTKSNLEADNAALSSSESQHEAAVAENELVLKQMLSEAAFTRLKESGTGLHCKSIQDLIDLSQKYYMDVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVVDKEKMASSIAGALNLLLGVPENRETDKSCDVHPLVWKWLELFLKKRFDWDLNRLNYKDVRKFAILRGLCHKVGIELVPRDFGMDSPFPFQKTDIVSLVAVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHIALRYLHKALKCNQKLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAAAKRRNQVRAISYQNNVSASSDESSKEIQKEASDEELHIPETGGSADSENETNSAPDPEPPILEKILDEKPQTSNDLLSEVHPDGDDGWQSVQRPRSAGSYGRRVKQRRATLGKVYSYQKNVEVGTEQHPSVKSGNQNSKYYFLKKRTMHHGGYADNRAVNISQGTKFGRKAVKAVAYRVKSTPSSSKTVVNETPEIGDKEPDSIDVNPVKTSIVSLGKSPSYKEVALAPPGTISKLQVYNPQSEIPISPKHDVGKHKEQDIEARRNINPTPKEANNAFKEKSDDSLSDSIEDSQDYTVVSTEKKEETQLNKVVQDNCVTFEGLESGDVEAQGAVDNSIVVDAVENVVDSYKQELIASNLPCSFEPSDNINSSPRGSEDLGVNLLSPTQSQAGGISCKKLSASAAPFNPSPAIARTAPIGMNMTHPSGPGPIPAIGPWPVNMNVHPGPVLPAVNPMCSSPHHAYPSPPTTPNMMQPLPFMYPPYTQPQSVQTSSPFHANHFAWQCNLNPVISKFGPGAVWTGCHPVEFPRPVPIVESIPDIISEPQVQSYTAESPSSASVLLEDIDKVGDSNKEVKTSAPEMNEDGMLRVGSESIKENGNLNFPGINNAGNEPNQNVGSNSSETNMDDEKTFSILIRGRRNRKQTLRMPISLLTRPHGSQSFKVIYNRVVRGNDSPRSINFSSSKHCTASA 1824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00923 1824 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1806 IPR027523 GO:0006996
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1378 1428 - -
Tsu08g00923 1824 Pfam Mitochondrial function, CLU-N-term 46 116 IPR028275 -
Tsu08g00923 1824 Gene3D Tetratricopeptide repeat domain 981 1110 IPR011990 GO:0005515
Tsu08g00923 1824 SUPERFAMILY TPR-like 874 979 IPR011990 GO:0005515
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 565 631 - -
Tsu08g00923 1824 SUPERFAMILY Hypothetical protein c14orf129, hspc210 176 264 IPR023231 -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1208 1239 - -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1737 1759 - -
Tsu08g00923 1824 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1806 - -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 123 145 - -
Tsu08g00923 1824 SMART tpr_5 950 983 IPR019734 GO:0005515
Tsu08g00923 1824 SMART tpr_5 992 1025 IPR019734 GO:0005515
Tsu08g00923 1824 SMART tpr_5 908 941 IPR019734 GO:0005515
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1319 1338 - -
Tsu08g00923 1824 Gene3D Tetratricopeptide repeat domain 867 980 IPR011990 GO:0005515
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1157 1175 - -
Tsu08g00923 1824 CDD CLU-central 697 836 IPR033646 -
Tsu08g00923 1824 Pfam Tetratricopeptide repeat 907 977 - -
Tsu08g00923 1824 Pfam Tetratricopeptide repeat 991 1065 - -
Tsu08g00923 1824 Pfam Translation initiation factor eIF3 subunit 135 695 836 IPR033646 -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 565 584 - -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 123 154 - -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1383 1401 - -
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 1145 1196 - -
Tsu08g00923 1824 ProSiteProfiles Clueless (Clu) domain profile. 296 573 IPR025697 -
Tsu08g00923 1824 ProSiteProfiles TPR repeat profile. 908 941 IPR019734 GO:0005515
Tsu08g00923 1824 MobiDBLite consensus disorder prediction 601 631 - -
Tsu08g00923 1824 SUPERFAMILY TPR-like 945 1072 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00923 Tsu-Chr8 10124096 10139752 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00923 K03255 - gmx:100808136 2745.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00923 08 10124096 10139752 Tsu08g00923 08 10124096 10139752 ECH