Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00898 aTGGGCATAGAAGATTCAACAATGACAGGTTTAACAGTGAAAACCCCAATTCAAATGCAATCATTTGGTATTTTCCTCCGTGAACCACCGCAAAATGAGGTCACCGACGACGATAACCACCGCAACCCATCACCGGCGATGAAGAAAACTATTAAGAAGACATTGATCATGGATGAAACCTCATTAGAAAACCCTGATTTGGGTCCATTTCTTTTGAAGATGGCAAGAGATACCATAGCTTCTGGTGAAAATCCTGAAAAAGCTTTGGATTATGCAATTCGGGCATCCAAATGTTTTGAACGGGTTTCGGGTCCGGGTTTGGATCTTGCCACGTGTTTACATGTTGTTGCTGCAATTTATTGTAGTTTGGGGAATTTGAATGAAGCTATTGAGGAATTGGAACGGTCTATTTTGTTGTTGGACGTTGAAAATGGGTCGGGTCATGCTATGGTGAAATTTTCTGGGTATATGCAACTTGGTGATACTTATTCTATGAGTGGACAATTGGATAGATCCATTTTGTGTTATGAGTCGGGTTTGAAGATTCAAATGGATATTTTGGGTAAATCTGATCCGAGAGTTGCAGAAACTTGCAGATACTTAGCTGAAGCTCATGTTCAAGCCATGCAATTCGATGATGCAGAGCACTTTTGCAAGAAGACACTAGAAATTCACCGGGAGCATTGCTCACCCGCTTCCCTTACAGAAGCAGCCGACCGGCGTCTCATGGCCCTAATATGCGAAGCAAAGGGAGATTATGAACTAGCACTCGAGCACCTTGTCCTAGCCAGCATGTCAATGATTGCTAACGGACAAGATAACGAGGTTGCAGCTATTGATGTTAGCATTGGAGATATTTACACGTCGTTGTGTCGTTTTGACGAAGCTGTTTTCGCCTATCAGAAAGCATTGACAGTGTTTAAATCTACCAAGGGTGAAAATCACAGTTCCGTGGCTTTAGTGTACATTCGACTCGCTGATCTTTACTACAAGACAGGAAAATTAAGAGAGTCGATATCCTATTGCGAAAACGCGTTAAGAATATACAGTAAACCTGTGTCTGGAATAACTGCCGGAGAGATTGCGAGTGGTTTGACTGAAATCTCTGCAATCTATGAAGCTCTAAACGAGCCCGAGGAAGCGCTGAAGCTCTTACAGAAGGCGGTGAAACTATTGGAGGGTATCCCTGGACAATATAGGACAGTTGCAGGAATAGAAGCTCAGATGGGAGTGATGTTCTACATGGTTGGTCGACATGTGGATGCTTGGAAATCTTTTGACAATGCCGTCACCAAGCTGAGAGGCGGTGGGGAAAGGAAATCTGCGTTTTTTGGATTTGTGTTGAACCAGATGGGTTTGGCGTGCGTTCAACTTTATAAAATAGAAGAGGCTGCTACACATTTTGAAGAAGCTAGAGAGATATTGGAGAGGGAGTGTGGAACCTATCATTTGGACACTCTTGGTGTGTATAGCAACCTAGCTGCAACTTatgatgcattaggaagAGTTGAAGATGCTATTCAAATATTGGAATACATACTCAAAATGAGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGACGAAAAGAAAAGATTGTTTGAGCTTTTGAAAGAAGCAGGAAGAGTTCGAAGTAGAAGGGGAAAATCTCTTGAAAAGCTTATAGATTCAAACACCTTAAAGATGAAGAAAGAAGGAAGAAGGAGATGGGGTGCATTTGGTTTAAGAACATAA 1740 0.4161 MGIEDSTMTGLTVKTPIQMQSFGIFLREPPQNEVTDDDNHRNPSPAMKKTIKKTLIMDETSLENPDLGPFLLKMARDTIASGENPEKALDYAIRASKCFERVSGPGLDLATCLHVVAAIYCSLGNLNEAIEELERSILLLDVENGSGHAMVKFSGYMQLGDTYSMSGQLDRSILCYESGLKIQMDILGKSDPRVAETCRYLAEAHVQAMQFDDAEHFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYELALEHLVLASMSMIANGQDNEVAAIDVSIGDIYTSLCRFDEAVFAYQKALTVFKSTKGENHSSVALVYIRLADLYYKTGKLRESISYCENALRIYSKPVSGITAGEIASGLTEISAIYEALNEPEEALKLLQKAVKLLEGIPGQYRTVAGIEAQMGVMFYMVGRHVDAWKSFDNAVTKLRGGGERKSAFFGFVLNQMGLACVQLYKIEEAATHFEEAREILERECGTYHLDTLGVYSNLAATYDALGRVEDAIQILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRSRRGKSLEKLIDSNTLKMKKEGRRRWGAFGLRT 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00898 579 Gene3D Tetratricopeptide repeat domain 263 443 IPR011990 GO:0005515
Tsu08g00898 579 ProSiteProfiles TPR repeat profile. 277 310 IPR019734 GO:0005515
Tsu08g00898 579 SUPERFAMILY TPR-like 110 523 IPR011990 GO:0005515
Tsu08g00898 579 Pfam Tetratricopeptide repeat 448 519 - -
Tsu08g00898 579 Pfam Tetratricopeptide repeat 276 350 - -
Tsu08g00898 579 SMART tpr_5 319 352 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 153 186 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 445 478 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 487 520 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 277 310 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 362 395 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 110 143 IPR019734 GO:0005515
Tsu08g00898 579 SMART tpr_5 195 228 IPR019734 GO:0005515
Tsu08g00898 579 Pfam MalT-like TPR region 114 261 IPR041617 -
Tsu08g00898 579 Gene3D Tetratricopeptide repeat domain 78 262 IPR011990 GO:0005515
Tsu08g00898 579 Gene3D Tetratricopeptide repeat domain 444 549 IPR011990 GO:0005515
Tsu08g00898 579 Coils Coil 123 143 - -
Tsu08g00898 579 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 40 579 - -
Tsu08g00898 579 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 40 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00898 Tsu-Chr8 9844541 9847996 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00898 - - gmx:100794697 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00898 08 9844541 9847996 Tsu08g00898 08 9844541 9847996 ECH