Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00882 ATGGAAACCAACAAGAACATGAATAAAACCTCAACCACTACCATAGAAGCAGAATTTGAGGATTTGCTACCAGTGATGGCAGAGAAACTTGATGTAGAAACCTTTGTATCTGAACTATGTAATGGTTTTAATCTTCTTGCAGACCAAGAAATAGGTTTGATCACAAGTGAAAGTCTTAGGAAAAACTCAGCTATGCTTGGTATGGATGGAATGAGTAAAGAAGATGCTgaagctatggtcaaacaaggtgaTCTTGATGGAGATGGAAAATTGAATGAAACTGAATTTTGCATATTGATGGTTAGGCTTAGTCCTGAAATGATGCAAGATGCTGAAACTTGGTTGGAGAAAGCAATTGAGGAACAGCCAAGAAATTAA 378 0.3439 METNKNMNKTSTTTIEAEFEDLLPVMAEKLDVETFVSELCNGFNLLADQEIGLITSESLRKNSAMLGMDGMSKEDAEAMVKQGDLDGDGKLNETEFCILMVRLSPEMMQDAETWLEKAIEEQPRN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00882 125 Gene3D - 16 125 - -
Tsu08g00882 125 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Tsu08g00882 125 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Tsu08g00882 125 Pfam EF-hand domain pair 52 102 IPR002048 GO:0005509
Tsu08g00882 125 PANTHER CALCIUM-BINDING PROTEIN KIC 8 122 - -
Tsu08g00882 125 PANTHER CALCIUM-BINDING PROTEIN KIC 8 122 IPR044205 GO:0005509
Tsu08g00882 125 SUPERFAMILY EF-hand 24 120 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00882 Tsu-Chr8 9652423 9653076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00882 10 122 EF-hand Containing Proteins AT2G46600 72.566 2.77e-59 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00882 K24345 - pop:7492793 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00882 08 9652423 9653076 Tsu08g00882 08 9652423 9653076 ECH