Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00879 ATGAACCAAGTGAAGCAAATTCATGGTTACACACTAAGAAATGGCATAGACAACACCAAAATCCTCATTGAAAAACTACTTGAAATCTCAAACCTAAACTATGCCAAATTATTGTTACAACATTCTCAAAAACCAACTGTTTTCCTTTACAACAAACTCATTCAAGCTTATTCCTCAAAAAACCAACACCAATGTTTCACCCTTTACTCCCAAATGCTCCTTCATGGTCACTCACCAAATCAACACACTTTCAACTTCATGTTTTCTACATGTATATCAATTTCATCACTTACCATTGGCCAAATGATTCATACCCATTTCATCAAATCAGGTTTTCAACCTGATGTATTTGCTGCAACTACTTTGCTTGATATGTATGCTAAATTGGGTGATTTGAAATGTGCACGCTAtgtgtttgatgaaatgtctGTGAGAGAGTTACCTACTTGGAATGCTATGATGGCGGGGTATACGAGGTTTGGTGATATGGAAAAAGCGTTGGAATTGTTTAGGTTGATGCCTTCTAGGAATGTGGTGTCGTGGACTACTATTGTATCGGGTTACTCGCAGAACAAGCAGTATGAAAAAGCTTTGGAGTTGTTTTTGAGGATGGAGAGGGAGAAAGATGTAATTCCTAATGATGTGACTTTGGCGAGTGTTTTGCCGGCTTGTGCGAATCTTGGTGCACTTGAGATTGGGCAGAGGGTTGAAGCATATGCAAGGGAAAATGggttttttatgaatttgtttGTGAGCAATGCTGTATTGGAGTTGTATGCAAAATGTGGTAAGATTGATGTAGCTTGGAAGGTGTTTGATGAGATAGGTATATTCAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTTCATGGACAGTGTCACAAAGCTATTGAGCTTTATGATCAATTGTTGATTGACGGAACTTTGCCGGATGACGTGACATTCGTGGGGCTTCTCTTGGCATGCACACATGGAGGCATGGTTGAAAAAGGAAAGCATATCTTCCAGTCAATGACAAGAGATTTCAACATTACACCCAAACTAGAACACTATGGCTGCATGGTTGATCTTTTAGGCCGTGCCGGGAAACTAAGAGAAGCTTATGAGGTCATACAAAATATGCCAATGAAGCCAGACTCAGTAATATGGGGTGCTTTATTGGGGGCTTGCAGTTTCCATAGTAATGTTGAGCTGGCTGAGATAGCAGCTGAGTCTTTATTTACACTTGAACCTTGGAATCCAGGAAACTACGTCATTCTTTCGAACATTTATGCATCAGCTGGCCAATGGGATGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGAAGCAAGATTACGAAGACTGCTGGACATAGCTTCATTGAAGAGGGAGGTCAATTGCATAAGTTTATTGTGGAGGATAGATCCCACTCAGAAAGTAGCGAAATTTTTGCTTTGCTAAATGGAGTTTATGAAATGATAAAGTTTAATAGAAATGAATATGAATGCCAATTGGAATTTTGTATTTGA 1521 0.3886 MNQVKQIHGYTLRNGIDNTKILIEKLLEISNLNYAKLLLQHSQKPTVFLYNKLIQAYSSKNQHQCFTLYSQMLLHGHSPNQHTFNFMFSTCISISSLTIGQMIHTHFIKSGFQPDVFAATTLLDMYAKLGDLKCARYVFDEMSVRELPTWNAMMAGYTRFGDMEKALELFRLMPSRNVVSWTTIVSGYSQNKQYEKALELFLRMEREKDVIPNDVTLASVLPACANLGALEIGQRVEAYARENGFFMNLFVSNAVLELYAKCGKIDVAWKVFDEIGIFRNLCSWNSMIMGLAVHGQCHKAIELYDQLLIDGTLPDDVTFVGLLLACTHGGMVEKGKHIFQSMTRDFNITPKLEHYGCMVDLLGRAGKLREAYEVIQNMPMKPDSVIWGALLGACSFHSNVELAEIAAESLFTLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKTAGHSFIEEGGQLHKFIVEDRSHSESSEIFALLNGVYEMIKFNRNEYECQLEFCI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00879 506 Pfam PPR repeat family 45 91 IPR002885 -
Tsu08g00879 506 Pfam PPR repeat family 176 225 IPR002885 -
Tsu08g00879 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Tsu08g00879 506 Pfam Pentatricopeptide repeat domain 110 142 IPR002885 -
Tsu08g00879 506 Pfam E motif 397 459 IPR046848 -
Tsu08g00879 506 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 459 - -
Tsu08g00879 506 SUPERFAMILY HCP-like 36 203 - -
Tsu08g00879 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Tsu08g00879 506 Pfam PPR repeat 283 308 IPR002885 -
Tsu08g00879 506 Pfam PPR repeat 253 275 IPR002885 -
Tsu08g00879 506 Pfam PPR repeat 354 379 IPR002885 -
Tsu08g00879 506 Gene3D Tetratricopeptide repeat domain 276 481 IPR011990 GO:0005515
Tsu08g00879 506 Gene3D Tetratricopeptide repeat domain 147 243 IPR011990 GO:0005515
Tsu08g00879 506 Gene3D Tetratricopeptide repeat domain 22 146 IPR011990 GO:0005515
Tsu08g00879 506 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Tsu08g00879 506 TIGRFAM PPR: pentatricopeptide repeat domain 179 213 IPR002885 -
Tsu08g00879 506 TIGRFAM PPR: pentatricopeptide repeat domain 120 145 IPR002885 -
Tsu08g00879 506 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Tsu08g00879 506 PANTHER OS06G0125600 PROTEIN 2 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00879 Tsu-Chr8 9631003 9632863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00879 5 492 Glycoside Hydrolase AT3G49170 33.199 4.97e-88 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00879 - - gmx:100790321 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00879 08 9631003 9632863 Tsu08g00879 08 9631003 9632863 ECH