Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00874 ATGCAAAGAAACGAGTTACATCGTAAAGTTTCTCTTTATTTACATTCTCTACCTTCTCTTGAAGATTCTGATTTCACAAATCTCATTAGTAATAACCAAAACGACATCGTTTTATCTCTTGATTCTAACCAAACAATTGAAGACCGGTTTCTCGGTGCAAAGCTTTTTTGGTTTAATCAAAAAActgaaccgaaccgaaccgGTGAATTTGTTCTGAAAATTAGAAAAACCGATAAACGAAGAATTCTCAGTAGCTATCTGCGCCACATTAATGATTTCTCCGATGAGATTGCAAATAAAGGAAAACGCGATTTACGGTTGTTTGTTAATGTTGCCGGAGTTAGTTACGGCGGAGATTTCGGCGGCGGAATGAGGTGGAGATCGGTTCCGTTTAATCATCCGGCGACGTTTGAAACGATGGCGATGGAAATAGATCTGAAGAAGAAAATCAAATCGGATCTCGAATCGTTCCTCAAAGCGAGGCAATATTATCGGAAAATCGGTCGTGCGTGGAAACGGAGCTTCCTTTTGTATGGTCCTTCCGGTACCGGAAAATCGAGCTTCGTTGCAGCGATGGCGAATTTTCTTTGTTACGATGTTTACGACGTTGATATCTCTAAGATTCGAAGTGATTCTGATTTGAAGTTATTGTTACTCGAAACAACGGCGAAATCGATTGTGGTTGTGGAGGATCTTGATCGGTTTTTAACGGAGGAATCGGAATTGCCGACGGTTACGGCGGCGGGAATTCAGAATTTCATGGACGGAATTCTCAGTTCGTGTTGTGGTGAAGAGAGAATTATGGTTTTCACGATGAACAGTAAGGAATTTATTGACCCGAATTTTCTCCGACCAGGTCGGGTCGACGTTCATATACATTTTCCGGTGTGTGATTTTTCGTCGTTTAAGACTTTGGCGAATAGTTATCTTGGAGTTAAAGATCATAAGCTGTTTCCTAAGGTGGAGGAAATTTTCCGGCATGGCGCGAGTTTAAGTCCGGCTGAGATCGGTGAGTTGATGATTGCGAATCGGAACTCGCCTAGTCGGGCTATAAAATCGGTTATCGGGGCGTTACAAATGGACGGTGATGGGCGAGGTGTTGGGGATATGATCGTACGGCATATAGATGATGATGAAAGTGATGGTTACTCTAATGTTAAGGATTTAAGGAAGCTATATGGTTTGTTTAGgggtGGTAGGTGGCGGCCGACCGCCGGAGCTCCGCCACCGACCACCGTACCGGCCGCCGGAGCTCCGCCGTGGACCACCGTGAAACTGCCGGAAAATCTGGGACCACCACCGGCAACCACCGCGCCGCCGTGGACCACCATGAAACCGCCGGAAAATCTGGGTCCGCCACCGGCAACCACCGCGCCGGCGCCGGAGGTCCGGCGTTGA 1398 0.4549 MQRNELHRKVSLYLHSLPSLEDSDFTNLISNNQNDIVLSLDSNQTIEDRFLGAKLFWFNQKTEPNRTGEFVLKIRKTDKRRILSSYLRHINDFSDEIANKGKRDLRLFVNVAGVSYGGDFGGGMRWRSVPFNHPATFETMAMEIDLKKKIKSDLESFLKARQYYRKIGRAWKRSFLLYGPSGTGKSSFVAAMANFLCYDVYDVDISKIRSDSDLKLLLLETTAKSIVVVEDLDRFLTEESELPTVTAAGIQNFMDGILSSCCGEERIMVFTMNSKEFIDPNFLRPGRVDVHIHFPVCDFSSFKTLANSYLGVKDHKLFPKVEEIFRHGASLSPAEIGELMIANRNSPSRAIKSVIGALQMDGDGRGVGDMIVRHIDDDESDGYSNVKDLRKLYGLFRGGRWRPTAGAPPPTTVPAAGAPPWTTVKLPENLGPPPATTAPPWTTMKPPENLGPPPATTAPAPEVRR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00874 465 Gene3D - 126 296 IPR027417 -
Tsu08g00874 465 MobiDBLite consensus disorder prediction 402 465 - -
Tsu08g00874 465 PANTHER BCS1 AAA-TYPE ATPASE 1 378 - -
Tsu08g00874 465 Pfam Domain associated at C-terminal with AAA 2 58 IPR025753 -
Tsu08g00874 465 SMART AAA_5 171 298 IPR003593 -
Tsu08g00874 465 MobiDBLite consensus disorder prediction 432 459 - -
Tsu08g00874 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 354 IPR027417 -
Tsu08g00874 465 PANTHER BNAC04G00800D PROTEIN 1 378 - -
Tsu08g00874 465 CDD AAA 172 295 - -
Tsu08g00874 465 Pfam ATPase family associated with various cellular activities (AAA) 176 295 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00874 Tsu-Chr8 9581811 9584923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00874 - K08900 gmx:100787809 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00874 08 9581811 9584923 Tsu08g00874 08 9581811 9584923 ECH