Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00812 ATGGAGCTCGACCTCCGCTCATTCCTTCCCGACGACACCGATTCCTCCGATCTCCACGTCACTCATCACCGAACCGTCGACGAAATTCTCAACGACTGCGACACTTCTTCATCGTCACCTTCTCCTCCTTCTTCTCctcacaacaacatcatcaacaataaaCCTATTCAATTTCCTCAACCCGTACCCGTTTATCTTTCTCGGGTCAAACCCGATAAACCTCCGCGCCCATTCTCTTCCTTATTTGGTCGTGTTACACCGAATGCTAAACCCGGTGCTGCTCTTGCTGCTGCTGTCGCTGCTTCTAGATCTGTTCCGACACCGCATGCGGCGGCGATTATTTCTAGGAGGAGAAGTTATAATTTGATTAGAACTGAATCGGATGGTTCTGATGTTGATTCTAAAGGTAGTGAATTGGGTGAGAAAATTGATGATTCTGTTGAAAAGAAAATTGAGAGGAGTGTGAGTGTTGATGATGGTGAAATTGCAGCAATTGAAGTGAATGAGAATGATAATGGTGTTGATGTTCAGGTGAAGAATGATTCTTCTGTTGTTAGTGAGGTGAAAAGTGATTTAGATGAGTGTTCTGTTTCTCCGTTATCAAATGATGTTGAAAATGGTCATGGTCatgatcatgatgatgatgagggtTTGAATGCTACATcttttgatgttgttgatgttaATGATAATGATTTTGGTGAAAAAACTAATCTTGattatgttgatgatgatgatgatgataaggGTGTTAAtgaaacagaagaagaaattgtGAATGGTGTTGGTGTTAGTGGTGGTGGTAGTTTTGTTGAAGGTATTGAGAATGAAGTGAAtaatgatgatggtggtggcgGCGACGATGATGGTGGTGGttatgatgatgttgatgatggtagTTCAATTGTAGATGTTTTTGAATTAGTAGAGAATACACTTGAGGAATTGGAAAGTGTAAAtgttacaaagaaaaaattagagtCTTTAAAGAAACCGCTTGATTTAGCTGAAGAATTGGAGAAGAAGAATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCGCAACCGATGAGGCTTGAGGGTGTTCGAAGAGGGTCGATTCAATTGGGATATTTTGATGTTGATGCTGATAATGCTATCACAAGGACCATTTCATCTCAAACATTTAGGCGTGAACATGGTTCTGCTAAAGTTTTGGTGGTTCATGCTAATTACATTGCAGTCGGAATGACAAAAGGGCTCATTGTTGTAGTTCCTAGTAAATATTCCATTCATCATGTGGATAATACAGATGGAAAGATGTTGATGCTTGGTATACAAGGTGATCGAACACATGCTCCAGTAACGTCCATGTCTTTCAATCAGCAAGGTGATCTTCTTTTAGCTGGTTATGGTGATGGTCATGTTACACTTTGGGATGTACAGAAAGGGGTAGTGGTAAAAGTTATTAGTGGAGAGCATACGGCACCAGTGGTACATGCCTTTTTTCTAGGACAAGATCCCCAGAATACTCGTCAATTTAAAGCAGTTACAGGTGATTGCAAGGGTCTGGTTCTCTTGCATCATATCTCAGTGGTTGTTTTGATTAATaggttcaaaattcaaactcagTGTCTTCTTGATGGGCAAAATACGGGCTTGGTACTATCTGCTTCACCACTCCTTTCCGATGAATTCGGTGGAAGTGCCTCATCTTATTCCCTGGGAAACACTACAGTGTCAGCCAGCAGTATAAGTAGCATGGTTGGAGGCGTTGTTGGAGGAGATGCAGGTTGGAAACTCTTCAATGAAGGCTCTTCTCTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTCAGTCCTAAATTGGAAGTCTATGCTCAACTCTCTAGGCCAAATGGAATTCGAGAGGGTTCTATGCCATATACTGCATGGAAATACATGGCACAAACATCTAGTTCTGCTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTAGCAATAGCTTGGGAACGGAAAGTTCAGGTTGCAAGGTTGGTCAAATCAGAATTAAAGGTATATGGAGAATGGTCTCTTGACAGTGCTGCTATAGGTCTGGCATGGCTGGATGATCAGATGCTGGTAGTTCTCACTTCAACTGGACAACTGAATTTATTTGCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTGGTGTAGATGGTATTGGAGGAGATGAACTACTTTCATATCATACTCACTTCGTTAACATATATGGGAACCCTGAGAAAGGTTATCATAACTCCATTGCTATAAGAGGAACTTCTATTTATATACTTGGTCCAACACATCTTATTGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATCTTGGTTTTACGGAAAGCAGGTGATTGGATGGGTGCCTTGAACATGGCAATGACTCTTTACGATGGCCATGCTCATGGGGTTGTTGATCTACCTAGAACCTTGGATGCTATACATGAAGCTATAATGCCCTTCTTGGAGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTTTGCAGCCAAATTGGAAAACCTGATCAACCAAATGATTCAAATAGTAGAAGCAATTCAGTGCATTCTGAAATAAAAGAGCAATACACCCGTGTTGGTGGAGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACAGACATCCTTTTTGATAACATTTTCTCCAAGTTCATTGATGTTCATGTTCAACAGAGAGAAACATTTTTGGAGCTTTTGGAGCCGTATATTTTGAAGGATATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCACAAAAGGGTGGCTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATTTCATCCTTAGATTTTAATCAGGTGGTCAGATTATGCCGGGAGCATGGACTATATAGTGCCCTAGTGTATCTCTTCAATAAAGGCTTAGATGATTTTAGAGCACCTCTTGAGGAGCTCTTTGCAGTCCTACAAAATAGCCAGAAGGAAAATGCTATTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTGCCTTTCCACCAGGTCATGGAACTATTCCTCCTACGCGGTTGCCATCTCTTAGAAAAGAACTAGTAGAGTTTTTGTTAGAGGACTCCAGTGCTATGAAATCACGGACAATTTCAGGTTCCATGTCGAAACAGCCATACCTGAATCTATATCTCCTCTTAGAGTTAGACACTGAAGCTACATTAGATGTCCTCCGATGTGCTTTCATGGAAGATGAAATTTCAAATTCCAGCTCATCTTCACCGGAGTCAGCTGATAGACCTATCGAAGaagcaaaagaagaaaataatgttaCTGAAACTGAAAATGTTTTGGTTCAGAATACGGTGGATGCTCTAATTCAAATTACTGATATGAATGTTGTTCCATCAGATACAACCTCTAGTAGTGGGGATGACGGATTATCAAAGGTGGGGATTTCGAAAGACAAAGGTTGTCTGTTTGAGTTCATTGCATATTATGTTGCTCGCCAAAGAGCTAAAGTTTCAAAGGCCATGCTTTGTCGAATATTGGAATATTTGACATTGGATAATCACATTTCAACTAATGTTTCTTCTCATAGCTCCACtccaaaaaaaagagagaagcaAGTGCTTGCACTTCTAGAAGTAGTTCCCGAGTCCGACTGGGATGTGCCGTTTCTACTAGACCTATGTGAGAGAGCCAAATACCATCAGGTTTGTGGATTGATTCATTCCATCAGACATGAGTATGTGGCTGCACTGGATAGCTATATGAAGGATGTAGATGAGCCTGTTCATGCCTTCTCCTTTATCAACAAAGCATTCTCACAGTTTATTGGTAATGACCATGCTGCTATTCGATCAGCAGTCCTCTCTCGAATTCCTGAATTGGTTGAACTAAGCAGGGAAGGTGCGTTCCATATGGTTACCAGACATTTTAGTGATGAAAGTTCCCATATCATCACTAAACTTCATTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTACACTTATTTGGCACCCTAGACTTGTCTGGTTTGACGAAGGATGTTATTACAAATCCCCCTAATGGAAAACAGGTTAAGGATCCTCCACAAGGAATTCATGATTACTTAGAAAATATATCCGATTTCCCCAAGTACATGCGTGAAAATCCAAGTCATGTGCCTGATGATCTTATTGAGCTTTACCTAAAGCTATTATGTCGGTATGAACGGAGTTCAGTTCTAAAGTTTCTAGAAATGTTCGATAGCTATCGTGTGGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATAGATGCTGCTGCTTTCTTATTGGAAAGAGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTgaatgataaatttgttgaGCTCGATACTGCTGTGGAGGCTGTAGTCTTAAACCACCCCAAGCTTGATTCTTCCCATACAGAAGTATTCAACACTGTTTTAAGAACAAAAGAGGTGAATGGCATGTACGAATTGTTGCATGCCTGTATCAGTCTTTGTCAGCGGAACACTCCTCGTCTAAATCCTGAGGAGTCAGAGTCACACTGGTTTAAATTACTTGACTCGTTTTGTGACCCATTGATGGATTCATATGTTGAAGAGAGAgcatatgaaagaaaaaattattttggtgtGCTGGCTGGATCAGCAGATTCACAACTGGATAAAGACACCTATCAAAGCAGTTGGAAGATTTCAAAGTCCCAAAATGGTGATATCTTGAGAAAATTGCTATCCCAGTTCATTAAAGAAATTGTTGAAGGAATGATAGGTTTTGTTCACCTTCCGGCTATAATGTCCAAACTCTTGTCTGATAATGGTAGTCAAgaatttggatattttaaacTTACCATATTAGGGATGCTGGCAACATATGGCTTTGAAAGAAGAATCCTGGATGCTGCCAAATCCTTGATAGAGGATGATACATTCTATACCATGAGTTTACTCAAGAAAGGGGCATCTCACGGATTTGCTCCCAGGACTTCAGTGTGCTGTATTTGTAATGCCTTGCTTACAAAAAACTCAGTTACCACCGGAATTCGAATTTTCAACTGTGGCCATGCAATTCATCTCCAGTGTGAAGTCTCTGAAGTCGAGTCGTCAAGCAAAGGATTTTCATCTGGATGCCCTGTATGCATGCCTAACCAAAAACCCCAAAAGTCTAGAAACAAATCAATGATTGCAGATAATGGTTTAGTCAATAGATTCTCATCAAGACGCCAACACCTGCCTGGAAGTACAATTCATCACCATGACAATGATTTATCAGAGAATATGTATGGAGGACAGCAACAGATATCACGGTTTGAGATCTTGAGCAGCTTGCAGAAAAATCCAAGCTTTATGCAATTAGAAAACTTGCCTCCTTTGAGACTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTGGCACACTATCAGACTGGAGAAAGTAGCAACAGTTCTGCAGTTATAGATAAACATAGTCGTCACAAACAAAACCGGGAGCTAAGAGTTAGAGGTTCATCAATTCGTTTTCCTCTAAAATCAAGTATATTTGGCAAGGACAAGACGAATAAGCGGTGA 5706 0.3887 MELDLRSFLPDDTDSSDLHVTHHRTVDEILNDCDTSSSSPSPPSSPHNNIINNKPIQFPQPVPVYLSRVKPDKPPRPFSSLFGRVTPNAKPGAALAAAVAASRSVPTPHAAAIISRRRSYNLIRTESDGSDVDSKGSELGEKIDDSVEKKIERSVSVDDGEIAAIEVNENDNGVDVQVKNDSSVVSEVKSDLDECSVSPLSNDVENGHGHDHDDDEGLNATSFDVVDVNDNDFGEKTNLDYVDDDDDDKGVNETEEEIVNGVGVSGGGSFVEGIENEVNNDDGGGGDDDGGGYDDVDDGSSIVDVFELVENTLEELESVNVTKKKLESLKKPLDLAEELEKKNASTGLHLEEGAAAQPMRLEGVRRGSIQLGYFDVDADNAITRTISSQTFRREHGSAKVLVVHANYIAVGMTKGLIVVVPSKYSIHHVDNTDGKMLMLGIQGDRTHAPVTSMSFNQQGDLLLAGYGDGHVTLWDVQKGVVVKVISGEHTAPVVHAFFLGQDPQNTRQFKAVTGDCKGLVLLHHISVVVLINRFKIQTQCLLDGQNTGLVLSASPLLSDEFGGSASSYSLGNTTVSASSISSMVGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHQTALVVRLSPKLEVYAQLSRPNGIREGSMPYTAWKYMAQTSSSAENMSAEAVERVSLLAIAWERKVQVARLVKSELKVYGEWSLDSAAIGLAWLDDQMLVVLTSTGQLNLFAKDGTVIHQTSFGVDGIGGDELLSYHTHFVNIYGNPEKGYHNSIAIRGTSIYILGPTHLIVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAIHEAIMPFLEELLTSYVDEVFSYISVAFCSQIGKPDQPNDSNSRSNSVHSEIKEQYTRVGGVAVEFCCHIKRTDILFDNIFSKFIDVHVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSQKENAIALGYRMLVYLKYCFTGLAFPPGHGTIPPTRLPSLRKELVEFLLEDSSAMKSRTISGSMSKQPYLNLYLLLELDTEATLDVLRCAFMEDEISNSSSSSPESADRPIEEAKEENNVTETENVLVQNTVDALIQITDMNVVPSDTTSSSGDDGLSKVGISKDKGCLFEFIAYYVARQRAKVSKAMLCRILEYLTLDNHISTNVSSHSSTPKKREKQVLALLEVVPESDWDVPFLLDLCERAKYHQVCGLIHSIRHEYVAALDSYMKDVDEPVHAFSFINKAFSQFIGNDHAAIRSAVLSRIPELVELSREGAFHMVTRHFSDESSHIITKLHSHPRSLFLYLKTLIELHLFGTLDLSGLTKDVITNPPNGKQVKDPPQGIHDYLENISDFPKYMRENPSHVPDDLIELYLKLLCRYERSSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSALSLTLSDLNDKFVELDTAVEAVVLNHPKLDSSHTEVFNTVLRTKEVNGMYELLHACISLCQRNTPRLNPEESESHWFKLLDSFCDPLMDSYVEERAYERKNYFGVLAGSADSQLDKDTYQSSWKISKSQNGDILRKLLSQFIKEIVEGMIGFVHLPAIMSKLLSDNGSQEFGYFKLTILGMLATYGFERRILDAAKSLIEDDTFYTMSLLKKGASHGFAPRTSVCCICNALLTKNSVTTGIRIFNCGHAIHLQCEVSEVESSSKGFSSGCPVCMPNQKPQKSRNKSMIADNGLVNRFSSRRQHLPGSTIHHHDNDLSENMYGGQQQISRFEILSSLQKNPSFMQLENLPPLRLAPPAVYHEKVSKVAHYQTGESSNSSAVIDKHSRHKQNRELRVRGSSIRFPLKSSIFGKDKTNKR 1901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00812 1901 MobiDBLite consensus disorder prediction 1864 1879 - -
Tsu08g00812 1901 MobiDBLite consensus disorder prediction 190 219 - -
Tsu08g00812 1901 Pfam Anaphase-promoting complex subunit 4 WD40 domain 433 490 IPR024977 -
Tsu08g00812 1901 Gene3D - 363 511 IPR015943 GO:0005515
Tsu08g00812 1901 ProSiteProfiles Zinc finger RING-type profile. 1709 1757 IPR001841 -
Tsu08g00812 1901 SMART ring_2 1709 1757 IPR001841 -
Tsu08g00812 1901 SUPERFAMILY WD40 repeat-like 431 732 IPR036322 GO:0005515
Tsu08g00812 1901 Coils Coil 1130 1150 - -
Tsu08g00812 1901 PANTHER VACUOLAR PROTEIN SORTING VPS41 303 1829 IPR045111 GO:0006623
Tsu08g00812 1901 Pfam Golgi CORVET complex core vacuolar protein 8 926 1110 IPR025941 -
Tsu08g00812 1901 MobiDBLite consensus disorder prediction 1116 1141 - -
Tsu08g00812 1901 Pfam Region in Clathrin and VPS 1402 1504 IPR000547 GO:0006886|GO:0016192
Tsu08g00812 1901 SUPERFAMILY RING/U-box 1708 1761 - -
Tsu08g00812 1901 CDD RING-H2 1709 1758 - -
Tsu08g00812 1901 MobiDBLite consensus disorder prediction 33 56 - -
Tsu08g00812 1901 MobiDBLite consensus disorder prediction 1854 1881 - -
Tsu08g00812 1901 Coils Coil 309 329 - -
Tsu08g00812 1901 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1370 1530 IPR000547 GO:0006886|GO:0016192
Tsu08g00812 1901 MobiDBLite consensus disorder prediction 205 219 - -
Tsu08g00812 1901 ProSitePatterns Trp-Asp (WD) repeats signature. 462 476 IPR019775 -
Tsu08g00812 1901 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 484 IPR001680 GO:0005515
Tsu08g00812 1901 PANTHER - 303 1829 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00812 K20178 - gmx:100785710 2697.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00812 08 8755426 8766788 Tsu08g00812 08 8755426 8766788 ECH