Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00781 ATGGTAGAAGTGGATAAAGACTCTTCTTGTGTTTCATTCACTACTTTCAATATTCTTGCTCCTATTTACAAACGGATTGATCCAcagAACCAAGGAGTTAGAGAAAGTGATTGCAGATCATTTTGGTTAACTAGGAATCAAAGGATTCTTGATTCATTGCTTTCGGAATCATCTTCTATTATGTGCCTACAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTACGAGGAAAGACTCGGGGATGCTGGCTATCAGCTTTTCAAGCTTGCTCGAACCAACAACCGTGGAGATGGTTTGCTGACTGCTATACGTAAAGAACATTTAAGTATTGTGAATTATCGAGAGTTGCTTTTCAATGACTGCGGTGACCGTGTTGCTCAGTTGTTACATGTTAAATCAGTTAATCCAAAAGACAGTATTAACCAAGAGTTTCTGATTGTGAATACTCACTTATTGTTTCCTCATGATTCAAGTCTGTCTATAGTGAGATTGGATCAGGTTTATCAAATATTACAATATGTTGAATTGTATCAGAGAGAAAACCGGCTGAAACCGATGCCTATTATACTCTGCGGCGACTGGAACGGAAGCAAGCGTGGACATGTTTACAAGTTCCTTAGGTCACAAGGGTTTGTATCATCATATGATATTGCCAATCAATATACCGATAGTTATGCAGATGCACACAAGTGGGTTAGTCACAGAAATCATAGAGGAAATATATGTGGTGTTGATTTCATTTGGCTTTGCAATCCTAACCAAGCGCGTAAACCGATGAAAACAAGTTGGGCTGAAGCTGTTTTTAGTATATTAAAGTTCCAGCTTCGGAAGGCGTCATTGTCTGAAGATGATGCATTCAGCTTTCTGAAGGGTGACAACTGTGCTGATTCTGTGACATATTTTAGTTTTACCGAAGCACTTCGTAAGGTAAAGTTAATTGGTGTGCCTTATGGACTATGCTTCCAACAGTTGCAAGATCTATGGAATCAAGTTGATGTTGATGGAAAGGGTGTCATCGACTTCGAAGAATTCAAGCAAAAGATTTGGAATTCTACATCAGAGCATGTGTATATGGAGGATTCTAACACCGAGCAAGAgcaagaagccgttggttttaAAGTGAAGAACGCAATGTTGTTTCCGCGTGAAATGGAGAAAGGACTTTGGCCTGAAGATTACACTCTTTCTGATCATGCTAGGTTAACTTGTGTATTTTCACCAGCAAAGATGTCATGTTCTTCGCTATAA 1254 0.3828 MVEVDKDSSCVSFTTFNILAPIYKRIDPQNQGVRESDCRSFWLTRNQRILDSLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYQLFKLARTNNRGDGLLTAIRKEHLSIVNYRELLFNDCGDRVAQLLHVKSVNPKDSINQEFLIVNTHLLFPHDSSLSIVRLDQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYTDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPMKTSWAEAVFSILKFQLRKASLSEDDAFSFLKGDNCADSVTYFSFTEALRKVKLIGVPYGLCFQQLQDLWNQVDVDGKGVIDFEEFKQKIWNSTSEHVYMEDSNTEQEQEAVGFKVKNAMLFPREMEKGLWPEDYTLSDHARLTCVFSPAKMSCSSL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00781 417 ProSiteProfiles EF-hand calcium-binding domain profile. 321 356 IPR002048 GO:0005509
Tsu08g00781 417 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 5 414 - -
Tsu08g00781 417 Gene3D Endonuclease/exonuclease/phosphatase 2 413 IPR036691 -
Tsu08g00781 417 SUPERFAMILY DNase I-like 8 230 IPR036691 -
Tsu08g00781 417 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 5 414 - -
Tsu08g00781 417 Pfam Endonuclease/Exonuclease/phosphatase family 45 220 IPR005135 GO:0003824
Tsu08g00781 417 SUPERFAMILY EF-hand 304 350 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00781 Tsu-Chr8 8285577 8289438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00781 76 415 EF-hand Containing Proteins AT1G02270 65.625 9.39e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00781 - - gmx:100777138 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00781 08 8285577 8289438 Tsu08g00781 08 8285577 8289438 ECH