Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00748 ATGGCGGGAAAAGCATGCGTCATGCGTCTTCAGAAGGAGTATAGAGCCCTTTGTAAAGATCCAGTTTCCCATATTGTGGCTCGCCCTTCACCAAGTGATATTCTTGAGTGGCATTACGTATTGGAAGGAAGCGAGGGAACACCCTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCAGAATATCCATATAAACCTCCTGGAATCAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGTGATTTTCATCCTGAAACTTGGAATCCAATGTGGTCTGTATCAAGCATACTTACCGGGCTTCTTTCATTCATGATGGACACCAGTCCAACAACTGGCAGTGTAAATACCACTACTGCCGAGAAGCAGCGTCTAGCAAAATCTTCACTCGCTTTCAATTGCAAAAATGCAACATTCAGGAAAATGTTCCCCGAGTACGTTGATAATTACAACCTGCAGCTAGAGCAAGCTGCTTCGGAACAGCATGCCTCATCAGAGTCTCATCATGATAAAAGTTCAAGATCTGTTTCGGAAACGAATATAGACTCAGCAGGAGAAGACATGAAAAAGATAGAGGGATTGAATGCTGTGAGGAGAAGCAAAAAACAACCATTTCCAACATGGTTGATGTTGTTGCTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTGCTTCAGCTGTGA 717 0.4296 MAGKACVMRLQKEYRALCKDPVSHIVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPETWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTAEKQRLAKSSLAFNCKNATFRKMFPEYVDNYNLQLEQAASEQHASSESHHDKSSRSVSETNIDSAGEDMKKIEGLNAVRRSKKQPFPTWLMLLLFSIFGVVMALPLLQL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00748 238 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Tsu08g00748 238 CDD UBCc 7 157 IPR000608 -
Tsu08g00748 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 238 - -
Tsu08g00748 238 PANTHER BNAA06G11590D PROTEIN 3 238 - -
Tsu08g00748 238 Gene3D Ubiquitin Conjugating Enzyme 2 179 IPR016135 -
Tsu08g00748 238 MobiDBLite consensus disorder prediction 172 186 - -
Tsu08g00748 238 SUPERFAMILY UBC-like 8 157 IPR016135 -
Tsu08g00748 238 SMART ubc_7 8 162 - -
Tsu08g00748 238 MobiDBLite consensus disorder prediction 167 194 - -
Tsu08g00748 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00748 Tsu-Chr8 7932555 7938171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00748 1 238 Miscellaneous Gene Families AT1G17280 74.059 1.65e-132 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00748 K04554 - gmx:100778181 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00748 08 7932555 7938171 Tsu08g00748 08 7932555 7938171 ECH