Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00716 ATGGCCAAACTTGGAAAATTAACAAAACTAAAATCAGCTATCAAAAGatggccatcattaaccaaaCTCAGCCGCAACAATAGCTCTGTATCTGCCTCCTGCAAGAACCAggaacaagaacaagaacaagaacaagatcTTCGTGCTGTTTATGTCGGAAAGTCACGACGGCGTTACCTTGTAAACTCTGAAGTTATTCAACACCCTGTGTTTCAGGAGCTAGTTGACAAGTCATGTTTTAATGGTGGTTGTGATGATGGTGTTGTGGTTGTTTCTTGTGAGGTTGTTTTGTTTGAACATTTGTTATGGATGCTTGAAAGTGCTGAAAGTGAAACAGCACAATTGGGATTAAAGTACTTGGCTTCTACCGGAGCTTTAGGAAAGTTGCAACCTAGTGATATTTCTGATTGTTGTGGTTGCAAACTTGCAAAATTTTCTGCTTTGCCCTTTAATAAAAGTACTTCTGTTTCTAATGCACCTTTTGATTTAGTTCATTCTGATGTGTGGGGTCCATCATCGGTTCTTACCAAAGGTGGATCTAAATATTATGTCTgttttattgatgattgtaGTCGTTATTGTTGGGTTTATCTTATGAAAAATCGTTCAgaattttatgatatttatcATATGTTTCGTGCTATGGTTAAAACTCAACATAATGCTGTTATAAAGTGTTTTCGTTGTGATCAAGGTGGCGAGTATACTTCTAATAAATTCTCTGAGTTGCTTGCTTATGATGGCACTATTCACCAGACTTCATGTACCGatactcctcaacaaaatggcgTTGCTGAAAGAAAACATCGTCATATTGTTGAAACTGCCCGTTCCCTTTTGTTATCTGCTGCAGTTCCAAGTGATTTTTGGGGTGAAGCAATGCGTACAACCGTCCATGTCATTAACAGGATTCCATCATCTGTCACTTCAGGTTTGTCTCCATTTGAGGCTTTGTATGGTTATGCTCCTGATTATTCTTATTTAAAAGTATTTGGCTCTACTTGTTTTGTTCTTCTTCCACAAGTTGAACGTAGTAAATTGTGTCCTCGCTCTGCAATATGTGTTTTCCTTGGTTATGGGGATGGTCAAAAGGGTTATCGTTGTTATAATcctattaataaaaaattttatGTTTCTCGTCATGTTGTGTTTCTTGAACACATACCATTTTACTCTCTTTCTTCTGATTCTCAGACTCATACCAGGTCCGAGCTTTTTCATATTGATCCTTTTGCCTTTGATGATAATATTTCTAGCGATTGTAGTATTGAAAATTGCAGGGCTGATACAACTACCACTCCATGTACAAATGCTCCCTCTGTCCCCACGGCTACCCAACAACCTCTTGCGACTGTTGATCCAACGCCATTTGCAACCCCTTCTCCTCGTTATCCTTCTAGTGATCGTAAGTCTACTCAATTGCCTGATTTTGTTTATTCCACTTATTCCCCTTCTTTTGCCTCTTTTCTAACCTCCATTCACAATTTGTCTGAGCCCTCTTTCTATAAAGAAGTTATTCTTGATCCTCTTTGGCAGCAGGCTATGGCAGAGGAACTTGCTGCTTTGCATAAGACAAATACTTGGGATTTAGTACCTCTTCCACCGGGAAAACATGCTATTGGGTCTCGTTGGATTGCTGACTTGTTCACGAAAACTCATTCTATTAAAcgttttcattttttgattgACAAACTCTCGATGCTTCCTATTAATGCATCATGA 1722 0.3606 MAKLGKLTKLKSAIKRWPSLTKLSRNNSSVSASCKNQEQEQEQEQDLRAVYVGKSRRRYLVNSEVIQHPVFQELVDKSCFNGGCDDGVVVVSCEVVLFEHLLWMLESAESETAQLGLKYLASTGALGKLQPSDISDCCGCKLAKFSALPFNKSTSVSNAPFDLVHSDVWGPSSVLTKGGSKYYVCFIDDCSRYCWVYLMKNRSEFYDIYHMFRAMVKTQHNAVIKCFRCDQGGEYTSNKFSELLAYDGTIHQTSCTDTPQQNGVAERKHRHIVETARSLLLSAAVPSDFWGEAMRTTVHVINRIPSSVTSGLSPFEALYGYAPDYSYLKVFGSTCFVLLPQVERSKLCPRSAICVFLGYGDGQKGYRCYNPINKKFYVSRHVVFLEHIPFYSLSSDSQTHTRSELFHIDPFAFDDNISSDCSIENCRADTTTTPCTNAPSVPTATQQPLATVDPTPFATPSPRYPSSDRKSTQLPDFVYSTYSPSFASFLTSIHNLSEPSFYKEVILDPLWQQAMAEELAALHKTNTWDLVPLPPGKHAIGSRWIADLFTKTHSIKRFHFLIDKLSMLPINAS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00716 573 MobiDBLite consensus disorder prediction 437 471 - -
Tsu08g00716 573 SUPERFAMILY Ribonuclease H-like 158 331 IPR012337 -
Tsu08g00716 573 Pfam Auxin responsive protein 15 105 IPR003676 GO:0009733
Tsu08g00716 573 ProSiteProfiles Integrase catalytic domain profile. 156 322 IPR001584 GO:0015074
Tsu08g00716 573 Gene3D - 152 331 IPR036397 GO:0003676
Tsu08g00716 573 MobiDBLite consensus disorder prediction 437 454 - -
Tsu08g00716 573 Pfam Integrase core domain 158 257 IPR001584 GO:0015074
Tsu08g00716 573 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR78 4 112 - -
Tsu08g00716 573 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 112 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00716 Tsu-Chr8 7623705 7629799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00716 479 558 Receptor kinase-like Gene Family AT4G23160 35.802 7.19e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00716 - - lang:109335479 577.785