Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00684 ATGGGGACACTTCGCTCTTTTGATCAATTTGCCAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTCGGTGATTTGTATTGCGACATTCCTCTAGGTCTTTATGTAATCCGTGGAGAGAATGTTGTTCTAATTGGTGAGATGGACTTGGAGAGGGAGGAACTTCCCCCACATATGACTCGTGTTCCTACGGAAGAAATCAGGAAGGCACAAAAAGTAGAAAGGGATGCTTCAGAACTGAAAGGGACTATGAGAAAAAGAATGGAGTTCCTTGACTTGGACTAG 288 0.4444 MGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDLEREELPPHMTRVPTEEIRKAQKVERDASELKGTMRKRMEFLDLD 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00684 95 Pfam LSM domain 2 47 IPR001163 -
Tsu08g00684 95 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 1 94 - -
Tsu08g00684 95 PANTHER LSM1 1 94 IPR044642 -
Tsu08g00684 95 Gene3D - 1 93 - -
Tsu08g00684 95 SUPERFAMILY Sm-like ribonucleoproteins 2 50 IPR010920 -
Tsu08g00684 95 SMART Sm3 1 48 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00684 Tsu-Chr8 7358817 7363152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00684 K12620 - ming:122084145 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00684 08 7358817 7363152 Tsu08g00684 08 7358817 7363152 ECH