Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00670 ATGATAAATAATCACcaacaagaattttttttggaaagtaTAACCATTGAAGGTTTTGCTACTGGAGCATTTCATTTTCCTTGCAATTCTTGGGTTCAAGCTAGAAAAGATCTTCCTGGAAAGAGAATTTTCTTTTCTAATAagGCTTATTTACCCAATGATACACCTGCTGGGATTAAAGTTTTGAGGGAGAAGGATTTGAAAATTCTTAGGGGTGATGGAAGAGGAGTTAGAAAATTATCCGACAGAATTTATGATTATGATGTATACAATGATTTGGGAAATCCAGATAAAGGACTTGATCTTGTTAGACCAACTCTTGGAGGAACTAAAATGTATCCATACCCTAGACGGTGTCGTACTGGCCGTGAACCAAGTGATACAGATATTACATGTGAGAGTCGAATTGAGAAGCCACTTCCAATGTATATACCAAGAGATGAAAGATTTGAGGAATCTAAAAAGAACACATTTTCAGTGAAGAGGCTTAAAGGAGTGCTACATAACTTGCTTCCTGGCCTTAAATCAAGTCTTTCTGCACACAATCAAGACTTCAATGAATTCTCAGATGTTGATGGCCTTTATAGTGTAGGGTTACTCATTAAGTTGGGTTTGCAAGATGATGTTTTGAAGAAACTTCCATTGCCTAAAATTGTTAGCAAGATCCAAGAATCCAGTCAGGGTATTCTTAAGTATGACATTCCCAAGATTATATCAAAGGACAAATTTGCTTGGTTAAGAGATGATGAATTTGCACGTCAAGCAGTAGCTGGAGTTAATCCTGTTACCATTGAGAGACTTACAGTTTTTCCACCAGTTAGTAAATTAGATCCTGAAATCTATGGTCCACAAGAGTCTGCCCTTAAAGAAGAGCACATTGTCCATCAACTTAATGGCATGACTGTCCAAGAGgCAATAGATGAAAATAAGTTGTATATAATTGATTATCATGACATCTATCTTCCATTTTTGGAAAGGATCAATGCTTTGGATGGTAGAAAATCATATGCTACAAGAACTATATATTTCTTGACACCACTTGGTACTCTAAAGCCAGTTGCTATAGAACTTAGCTTACCTCCATCTGGACCAAACACCCCATCAAAACGTGTAGTTACACCTGCTTTAGATGCAACTACTAATTGGACTTGGATGCTTGCAAAAGCTCATGTTTGCTCCAATGATGCTGGTGTGCACCAACTTGCTCACCATTGGCTACGAACACATGCTTCCATGGAACCATTCATATTGTCTGCTCATAGGCAATTAAGTGCAATGCATCCAATTTTCAAGTTATTGGATCCACACATGAGGTACACTTTGGAGATCAATGCTTTAGCTCGTCAGAGCTTGATCAATGCAGATGGTGTCATTGAGTCTTGCTTCACTCCCGGTCGCTATGCAATGGAGATTAGTTCGGCTGCTTACAAAGCCTCTTGGCGTTTTGACAAGGAAAGCCTCCCTCAAGATCTCATCCGCAGGGGAATGGCTGTTCCTGACCCAACACAACCACATGGCCTAAAGCTAACAATGAAAGATTACCCTTATGCAGAAGATGGTCTTCTAATTTGGTCAGCAATAGAAAATTGGGTCCGGAAATATGTGAACTATTACTATCCAAATCCAAGCCTAATAATCAGTGATAGAGAGTTACAAGCTTGGTACTCAGAATCAATCAATGTAGGCCATGCTGATTTAAAGGACGAAACATGGTGGCCGAAGTTGAACGACAGTGACAATCTTGTTTCGGTCCTGACAATCTTAATTTGGAATGCATCTGCGCAACATGCCGCACTTAATTTCGGACAGTATCCTTATGGAGGGTACGTGCCAAATCGTCCACCGTTGATGAGAAGATTGATACCTGAAGAAAGTGATCCTGAATATGCAAGTTTCATATCTGATCCACAAAAGTATTTTCTCAATGCATTGCCTAGTTTGTTGCAAGCTTCAAAATATATGGCTGTTGTTGATACGCTTTCGACTCATTCAGCTGACGAAGAGTATTTAGGTGAGAGGCAACATCCTTCGACTTGGAACGGTGATGCTGAGATTGTCGAAGCGTTTTATGAATTTTCTGCTGAAATTGGAAAGATTGAGAAAGTGATTGATAGTAGAAACAGTGATAGGAATTTGAGAAACCGTTGTGGTGCTGGTGTTTTGCCTTATGAATTGCTTGCTCCTAGTTCTGAACCTGGTGTTACATGCAGAGGGGTTCCAAATAGTGTGTCCGTATAA 2238 0.3914 MINNHQQEFFLESITIEGFATGAFHFPCNSWVQARKDLPGKRIFFSNKAYLPNDTPAGIKVLREKDLKILRGDGRGVRKLSDRIYDYDVYNDLGNPDKGLDLVRPTLGGTKMYPYPRRCRTGREPSDTDITCESRIEKPLPMYIPRDERFEESKKNTFSVKRLKGVLHNLLPGLKSSLSAHNQDFNEFSDVDGLYSVGLLIKLGLQDDVLKKLPLPKIVSKIQESSQGILKYDIPKIISKDKFAWLRDDEFARQAVAGVNPVTIERLTVFPPVSKLDPEIYGPQESALKEEHIVHQLNGMTVQEAIDENKLYIIDYHDIYLPFLERINALDGRKSYATRTIYFLTPLGTLKPVAIELSLPPSGPNTPSKRVVTPALDATTNWTWMLAKAHVCSNDAGVHQLAHHWLRTHASMEPFILSAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGVIESCFTPGRYAMEISSAAYKASWRFDKESLPQDLIRRGMAVPDPTQPHGLKLTMKDYPYAEDGLLIWSAIENWVRKYVNYYYPNPSLIISDRELQAWYSESINVGHADLKDETWWPKLNDSDNLVSVLTILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEESDPEYASFISDPQKYFLNALPSLLQASKYMAVVDTLSTHSADEEYLGERQHPSTWNGDAEIVEAFYEFSAEIGKIEKVIDSRNSDRNLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSV 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00670 745 Gene3D - 378 744 - -
Tsu08g00670 745 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 2 743 - -
Tsu08g00670 745 Gene3D - 51 153 - -
Tsu08g00670 745 Pfam PLAT/LH2 domain 2 45 IPR001024 GO:0005515
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 42 63 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 114 133 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 230 246 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 81 97 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 182 203 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 336 360 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 16 34 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 269 288 IPR001246 GO:0016491
Tsu08g00670 745 PRINTS Plant lipoxygenase signature 657 671 IPR001246 GO:0016491
Tsu08g00670 745 ProSiteProfiles PLAT domain profile. 1 46 IPR001024 GO:0005515
Tsu08g00670 745 ProSitePatterns Lipoxygenases iron-binding region signature 1. 399 413 IPR020833 GO:0016702|GO:0046872
Tsu08g00670 745 Gene3D PLAT/LH2 domain 1 50 - -
Tsu08g00670 745 Gene3D - 243 376 - -
Tsu08g00670 745 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 49 745 IPR013819 GO:0016702|GO:0046872
Tsu08g00670 745 SUPERFAMILY Lipoxigenase 51 745 IPR036226 -
Tsu08g00670 745 Pfam Lipoxygenase 59 728 IPR013819 GO:0016702|GO:0046872
Tsu08g00670 745 PRINTS Lipoxygenase signature 419 439 IPR013819 GO:0016702|GO:0046872
Tsu08g00670 745 PRINTS Lipoxygenase signature 381 398 IPR013819 GO:0016702|GO:0046872
Tsu08g00670 745 PRINTS Lipoxygenase signature 399 416 IPR013819 GO:0016702|GO:0046872
Tsu08g00670 745 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 2 50 IPR036392 GO:0005515
Tsu08g00670 745 Gene3D - 154 242 IPR027433 -
Tsu08g00670 745 PANTHER LIPOXYGENASE 2 743 IPR000907 GO:0016702|GO:0046872
Tsu08g00670 745 ProSitePatterns Lipoxygenases iron-binding region signature 2. 426 436 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00670 Tsu-Chr8 7170450 7176763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00670 1 745 Acyl Lipid Metabolism Gene Families AT1G17420 74.129 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00670 K00454 - gmx:100793614 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00670 08 7170450 7176763 Tsu08g00670 08 7170450 7176763 ECH
Tsu08g00670 08 7170450 7176763 Tsu08g00670 08 7170450 7176763 PCT