Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00663 ATGGCGGTTTCAACTATAGCTTTATACGCGAGTCCACCGAGTAGTGCATGTTCACCACCGTATCAGATTAATTCTCACGCTTCTTATGATTTCGAATTTGGATCTAGATCTTCTTCTCCGGCGTCGACGGCGACGGCGTCGACATCGGCGAAACCGGTGATAGGAGGATTATCGTGTTTGTTTTCATCACCGACGGTTGTGAAGCATGTTCCGTTAAGTTCGAGTTTTTCCGGTGgaggtgaagaagatgaattgaaGGAACTGAGTAGTTcattttcatattcttattcTCCAAGCAAGTTTGGATCTTGGAAGAGGGATCATCAAATTCAGAGCCCTGTTTCTGTTTTTCAGTGTCCTGTTTcgtgtagtagtagtagtatcgGTACATCTCGGTCGACGGGGAAGAGTAATACTGGTGGATTGTATGATGGGTTTGTGAGAAGTGCTTTGGGTTCTTCTTGTTTGGATTATGATTCTACCAGTGTTAAATTACGCGGTGGAGGTGTTGATGAATTGACTTTCAATTTGGATGATACTTTTGAAGAAGGTTGCTTTGGATTTGAAATTGAGCCTTATGCTAAGAAGTTGTTGATGAGTGCCCAGTTAAGACATAAGATCTTTTGTGATGAGTTTGTAATTAAGGCCTTTTGTGAAGCTGAGAAAGCACATAGAGGACAGATCCGAGCTAGTGGGGATCCATATTTGCAGCATTGTTTGGAAACAGCTGTGTTGTTGGCTTTGATCGGTGCGAATTCGACTGTAGTTGCTGCGGGGCTTTTgcatgatacacttgatgatgCTTTTCTTACTTATGATTATATATTTGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGACAATAATACAGCTAGCAAGTCTGTTGAAGCTGACAGGCTGCATACAATGTTTCTTGCCATGGCAGATGCAAGAGCTGTTCTCATTAAATTAGCAGATCGATTACATAATATGATGACACTAGATGCATTGCCGGTTGCCAAGCAGCAGAGGTTTGCAAAGGAGACTCTGGAGATTTTTGCACCTTTGTCCAATCGCTTAGGTATATCTAATTGGAAGGAACAATTAGAAAACTTATGTTTTAAGCATCTCAACCCAGTGCAGCACAAGGAGCTTTCGTCAAAGCTTGTGGAATCGTATGATGATGCAATGATTGCTTCTGCAATTGAGAGATTAGAGCAAGCACTCAAAGATGAAGGCATTTCGTATCATGTCATTTCTGGGAGGCACAAGAGCTTGTATAGCGTTTATATCAAAATGTTAAAGAAAAAGCTAACCATCGATGATATCCATGATATTTATGGGCTGCGTTTGATTGTTGAGAAGGAAGAAGACTGTTACAAAGCCTTAAATGTTGTTCACCAGTTATGGTCCGAGGTGCCTGGAAAACTGAAAGATTACATAAATTTCCCCAAGTTCAATGGGTATGTTGTAGCTCAATAA 1506 0.3938 MAVSTIALYASPPSSACSPPYQINSHASYDFEFGSRSSSPASTATASTSAKPVIGGLSCLFSSPTVVKHVPLSSSFSGGGEEDELKELSSSFSYSYSPSKFGSWKRDHQIQSPVSVFQCPVSCSSSSIGTSRSTGKSNTGGLYDGFVRSALGSSCLDYDSTSVKLRGGGVDELTFNLDDTFEEGCFGFEIEPYAKKLLMSAQLRHKIFCDEFVIKAFCEAEKAHRGQIRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLSNRLGISNWKEQLENLCFKHLNPVQHKELSSKLVESYDDAMIASAIERLEQALKDEGISYHVISGRHKSLYSVYIKMLKKKLTIDDIHDIYGLRLIVEKEEDCYKALNVVHQLWSEVPGKLKDYINFPKFNGYVVAQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00663 501 Gene3D Beta Polymerase, domain 2 389 499 IPR043519 -
Tsu08g00663 501 SMART RelA_SpoT_2 429 501 IPR007685 GO:0015969
Tsu08g00663 501 SUPERFAMILY HD-domain/PDEase-like 195 386 - -
Tsu08g00663 501 Gene3D Hypothetical protein af1432 194 386 - -
Tsu08g00663 501 PANTHER - 1 497 - -
Tsu08g00663 501 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 497 - -
Tsu08g00663 501 Pfam HD domain 220 370 - -
Tsu08g00663 501 Pfam Region found in RelA / SpoT proteins 429 497 IPR007685 GO:0015969
Tsu08g00663 501 SMART hd_13 231 348 IPR003607 -
Tsu08g00663 501 CDD HDc 233 361 IPR003607 -
Tsu08g00663 501 SUPERFAMILY Nucleotidyltransferase 376 497 IPR043519 -
Tsu08g00663 501 CDD NT_Rel-Spo_like 409 497 IPR007685 GO:0015969
Tsu08g00663 501 ProSiteProfiles HD domain profile. 235 339 IPR006674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00663 Tsu-Chr8 7089834 7093928 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00663 230 497 EF-hand Containing Proteins AT3G17470 29.268 4.94e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00663 K00951 - gmx:100787301 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00663 08 7089834 7093928 Tsu08g00663 08 7089834 7093928 ECH