Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00646 ATGAAGATGATTCACATTATTCTTTACTTTCTTGCTCTTCTCTTATCATATACCTCAAATGCTACTTCTTCTGTCAATGATTTTTGTGTTGCAAATTTATTGCTTCCAAACACCCCTTCAGGCTATCCATGCAAATCAGAAACAAATGTAAcagtgaatgattttgtgttctctaatttttttcctgGAAATACAACAGCAACTTTTAATTTTGGAATAACCACTGCATTTGTCAATGATTTACCAGGTCTTAATGGACTTGGTATCTCTGCAATAAGAGGTGATATTGGTATAAATGGAACTGCACCAATGCATATTCATCCTGATGCAACTGAATTAGTAATCATGGTTAAAGGCCAATTAACTGTTGGAtttattacaacaaaaaaagtttatttgaaaattattaaaCCTGGTGATATTTTTGTTATTCCAAAAGGATTAATGCATTTTGCAGTTAACTCTGGTGTTGAAAAAGTTATTGTTTTTGCTGCTTATAGTAGCTCAAATCCTACCATACAATTAGTTGATGTTTTGTTATTTGGTAATAACTTACCAACTCAAACAGTTTCAAAGACTACTCTTCTTGATCCTGAACAAATTATGAAGCTTAAGGCTGTGTTTGGTGGCGGTGAAAAGGATTTGGTTGCTAATTATGAATCATCCACCTCTATatga 678 0.3009 MKMIHIILYFLALLLSYTSNATSSVNDFCVANLLLPNTPSGYPCKSETNVTVNDFVFSNFFPGNTTATFNFGITTAFVNDLPGLNGLGISAIRGDIGINGTAPMHIHPDATELVIMVKGQLTVGFITTKKVYLKIIKPGDIFVIPKGLMHFAVNSGVEKVIVFAAYSSSNPTIQLVDVLLFGNNLPTQTVSKTTLLDPEQIMKLKAVFGGGEKDLVANYESSTSI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00646 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 208 - -
Tsu08g00646 225 Pfam Cupin 62 201 IPR006045 -
Tsu08g00646 225 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Tsu08g00646 225 PRINTS Germin signature 167 182 IPR001929 GO:0030145
Tsu08g00646 225 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Tsu08g00646 225 SMART Cupin_1_3 58 202 IPR006045 -
Tsu08g00646 225 CDD cupin_OxOx 23 208 - -
Tsu08g00646 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 9 208 - -
Tsu08g00646 225 Gene3D Jelly Rolls 22 212 IPR014710 -
Tsu08g00646 225 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
Tsu08g00646 225 SUPERFAMILY RmlC-like cupins 24 205 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00646 Tsu-Chr8 6995109 6996207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00646 23 210 Miscellaneous Gene Families AT1G72610 45.789 1.85e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00646 - - cam:101508818 264.618