Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00641 ATGAAGATTATTCACATACTTTTCCTTTTAACTCTTCTCTCTTCCACTACTTCTCATGCTTCTGTCCATGATTTTTGTGTAGGAGATATAATGCATCCAGAAACCCCAACAGGCTATCACTGCATGCCCCTTGCAAACATCACATCAGAAGATTTCGTCTTTCACGGCTTCGTAGCTGGAAACACCAACAACTCTTTCAACGCCGCACTTACCTCGGCATTCGTTACCGATTTTCCAGGTCTTAACGATCTTGGAATCTCGGCAGCACGATTAGACATAGCCGAAGGTGGATCAATTCCAATGCATACTCATCCTGGTGCTACCGAATTATTGATAATGGTTCAAGGTGAAATAACTGCTGGATTTTTGACAACTAGTGCGGTTTATTCTAACACGTTAAAACCGGGTGATCTTATGGTTTTTCCACAAGGAATGTTGCATTTTCAAGTTAATTCTGGCAAGGGAAAAGCTACTGCTTTTCTTACTTTTAGTAGTGCAAATCCAGGTGCTCAATTACTTGATCTTCTTTTGTTTTCCAATAATTTGCCTTCTAATTTAGTGGCACAAACTACTTTCCTTGATCTTGCACAAGTGAAAAAGCTAAAGGCACGTTTTGGTGGAAGAGGGTAG 630 0.4048 MKIIHILFLLTLLSSTTSHASVHDFCVGDIMHPETPTGYHCMPLANITSEDFVFHGFVAGNTNNSFNAALTSAFVTDFPGLNDLGISAARLDIAEGGSIPMHTHPGATELLIMVQGEITAGFLTTSAVYSNTLKPGDLMVFPQGMLHFQVNSGKGKATAFLTFSSANPGAQLLDLLLFSNNLPSNLVAQTTFLDLAQVKKLKARFGGRG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00641 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Tsu08g00641 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Tsu08g00641 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Tsu08g00641 209 SMART Cupin_1_3 55 199 IPR006045 -
Tsu08g00641 209 Gene3D Jelly Rolls 19 208 IPR014710 -
Tsu08g00641 209 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Tsu08g00641 209 Pfam Cupin 58 198 IPR006045 -
Tsu08g00641 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 205 - -
Tsu08g00641 209 SUPERFAMILY RmlC-like cupins 50 206 IPR011051 -
Tsu08g00641 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 205 - -
Tsu08g00641 209 CDD cupin_OxOx 19 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00641 Tsu-Chr8 6970569 6971553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00641 19 209 Miscellaneous Gene Families AT1G72610 58.031 1.03e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00641 - - gmx:100783206 309.686