Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00640 atgatgaaaattatTTACATACTTTTCCTTTTCACTCTTCTATCATCATCCCATGCATCTGTCAATGATTTCTGTGTAGCAGATACAAAAGCTTCAGACACTCCTACAGGCTATCCTTGCAAACCTGTTTCACAAATCACATCAGACGATTTCGTCTTCCACGGCTTTGTAGCTGGAAACACCAACAGCTCTAACCCAGTTGCACTTACCCCTGCATTTGTCACCCAATTTCCAGCTCTTAACGGACTTGGAGTATCGGCGGCACGTTTAGACTTAGCCCAAGGTGGAACAGTTCCAATGCATACTCATCCCGGTGCAACTGAGTTGGTAATAATACTTGAAGGCGAAATTACTGCTGGGTTTCTAACACCTACTACGGCTTATTCTAAGACGTTGAAATCGGGTGATCTTATAGTTTTTCCACAAGGGATGTTACATTTTCTAGTTAATTCTGGTCAGGGAAAAGCTAGTGCTTTTCTTACTTTTAGTAGTGCAAACCCTGGTGCTCAATTACTTGATAATCTTTTGTTTTCCAATAATTTGCCTTCTAGTTTAGTGGCCCAAACTACTTTCCTTGATCTTGCACAAGTGAAGAAGCTTAAGGCTCGTTTTGGTGGAAGTGGATAG 627 0.4083 MMKIIYILFLFTLLSSSHASVNDFCVADTKASDTPTGYPCKPVSQITSDDFVFHGFVAGNTNSSNPVALTPAFVTQFPALNGLGVSAARLDLAQGGTVPMHTHPGATELVIILEGEITAGFLTPTTAYSKTLKSGDLIVFPQGMLHFLVNSGQGKASAFLTFSSANPGAQLLDNLLFSNNLPSSLVAQTTFLDLAQVKKLKARFGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00640 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 8 204 - -
Tsu08g00640 208 CDD cupin_OxOx 17 204 - -
Tsu08g00640 208 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Tsu08g00640 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Tsu08g00640 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Tsu08g00640 208 SUPERFAMILY RmlC-like cupins 23 205 IPR011051 -
Tsu08g00640 208 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Tsu08g00640 208 SMART Cupin_1_3 54 198 IPR006045 -
Tsu08g00640 208 Gene3D Jelly Rolls 16 208 IPR014710 -
Tsu08g00640 208 Pfam Cupin 57 197 IPR006045 -
Tsu08g00640 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00640 Tsu-Chr8 6967882 6968508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00640 1 207 Miscellaneous Gene Families AT5G20630 53.333 1.72e-72 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00640 - - gmx:100783206 302.367