Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00638 ATGATTtccaaaataattttcattctttttctcttaactCTTCTCTCACATTCCATAACCAATGCTTCTGTAGTAGATTTCTGTGTAGCAGATTTATCTTCTGCAGAAACTCCTTCAGGCTTTCCTTGCAAATCATCAGTAACAATCAATGACTTCATTTTCTCAAACTTCAATTCAGGAAACACTTCAAACAACCCTCTCAGATCTGCATTTACCTCTGCATCTGTTCATCAATTTCCGGCCGTAAACGGCCTCGGGATATCGGCCTCAAGGTTAGACTTAGACGTAGGCGGCATTGTCCCGATACATTCACATCGCGGCGCGTCCGAGATAGTAATGATGGTACAAGGTCGTATAACTGTTGGTTTTATTTCTTCAGATAATTCTGTTTTTGTTAAGACACTTTCTAAAGGTGAAATTATGGTTATTCCACAAGGTTTATTGCATTTTCAATTTAATGCTGGAAGGAACAAAGCTACTTCTTTTCTTGCTTTTAGTAGCTCAAACCCTGGTGCACAACTTGTTGATCTTGCTTTGTTTGGAAATAATTTGAGTTCTGCTATTGTGGAAAAAACTACTTTGCTTGATCCTGCTCAAGTTAAAAAGCTTAAGGCTATTTTTGGTGGGAGTGGATAG 636 0.3695 MISKIIFILFLLTLLSHSITNASVVDFCVADLSSAETPSGFPCKSSVTINDFIFSNFNSGNTSNNPLRSAFTSASVHQFPAVNGLGISASRLDLDVGGIVPIHSHRGASEIVMMVQGRITVGFISSDNSVFVKTLSKGEIMVIPQGLLHFQFNAGRNKATSFLAFSSSNPGAQLVDLALFGNNLSSAIVEKTTLLDPAQVKKLKAIFGGSG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00638 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 9 207 - -
Tsu08g00638 211 SMART Cupin_1_3 55 201 IPR006045 -
Tsu08g00638 211 SUPERFAMILY RmlC-like cupins 24 205 IPR011051 -
Tsu08g00638 211 CDD cupin_OxOx 24 207 - -
Tsu08g00638 211 Pfam Cupin 59 201 IPR006045 -
Tsu08g00638 211 Gene3D Jelly Rolls 21 211 IPR014710 -
Tsu08g00638 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Tsu08g00638 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Tsu08g00638 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Tsu08g00638 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00638 Tsu-Chr8 6936410 6937045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00638 5 210 Miscellaneous Gene Families AT5G20630 49.519 1.01e-69 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00638 - - lja:Lj3g3v2590370.1 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00638 08 6936410 6937045 Tsu08g00638 08 6936410 6937045 ECH