Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00631 ATGTTGGGGCCATTTGTTGATCTTCCATTCCATGCAATTCTCGGTGATAGGGATATTGGAGAATGCAGTGATCTTGATGCGAATAATGTTAACTGGATTGCTCGCAAGTTACCGGGATTGGATAGTTCTGGCTGTGGTGCATTTGAAATTGGCAATGTCAGTTTTGTTTCGCTGAATTCCGTGGCCTTGCTTTGTGACAACAGTAGTTTACGTTTTGATGTTGAAAAAGTAATTGAGAGGGAAAGTCTAGAACTTCGCGAGGAAACTGAGGCAGCAACGAAAATGATGAATCATTCCACCCTCTCTAGAGATGTTAACTATAACTTTTTCTGGAGGGAGATCACTGTGTTATCCGGATCAGGCCCTGTCCTTCTTCTGCACTTACCTTTGGACCAAACAAGAAACAAGCACTATAGTGGCAATGATGCGTTCGAAAGATCTTCTAGCTCTTTTATAGAGCGGTTGAATCTAGTGCCAAAAAACAGGGATTTCATTGGGACCGGTCTGTATAATTTACTTCATACTCTCCCATTGAATGCTTCTGAGTACATTTTACAAGCTTTGAGACCAAGGGTTATCTTCAGTGCTCACAGGTGCACGTTTTCTGATCACGTCCATTTTGACACAACTCGAGAGATTATCGTCCCATCAATGTCGTGGAATGCAAGAGATGATCCTGGATTTGTTATTGCCACTTTCCAAAAGACAGGAAAAGCTGTGAGCATCAACTACTGCTCTCTTGCTAGAGAATCTCATATTCTTGTAATTTATGTTTCTAtactagttttattttgtttagcaTGTTTAAAAGGATAcaAAGAATTGACGCATAGGAttcagattcatcttcttccttcgaTTCAACCAAGCTTTATCAATGGCGGCAcagtaacaacaacaacaactacaCAAATCCCACACTTTTCAACAATGGCAGAAAACGTAATTGGTTCACCATCTTCAACAATGGAAAACCCCTCTTCTTCAAACCCTACAATTCCATCACCTTCACCAAtttctcaacaacaacaacaatctccTTCAATTCACATGTCATCATCATCACCGTCTCTCTCtcaagatcaacaacaacaacattcacAGTTACAACATAGCATCAATAACattaaccctaaccctaattcTAATGTTTCTAATTTTCAACTTCAACAATCACTTCAACGTTCTCCTTCTATGTCTCGTCTTAATCAAATTCAACCTCAGCAGCAGCAACAGCAACAGCAGCAAGTTGCGAGGCAGCAACTTTATGGTGGGCAGATGAATTTTGGTGGATCAGCTGCTGTTTCTGCTCAGCAACAGCAATTATCCGGTGGTGGTATCGGCGGTAATGCTTCCAATTTGTCGCGGTCGGCTTTAATTGGACAGAGTGGTCACTTCCCCATGTTGTCTGGTGCTGGAGGAGCTCAGTTTAACTTACTAGCCTCGCCGAGGCAGAAAAGTGGTTTGGTGCAATCATCGCAATTTTCTTCGGGTAATTCTGCTGGACAGTCACTGCAAGGAATGCAACAAGCTATTGGGATGATGGGGTCGTCCAATCTAGCCTCTCAAATGAGAACTAATGGAGCTCTTTATGCTCAACAGCAGCAGCTTCGAATGACTCCGGCCCAAATTAGACAGCAGCTCTCACAGCAGGCTTCACTTAGCAATCAACAGGTTCAAGGTTTACCAAGGTCATCGTCCCTTGCTTTTATGAATCCTCAGTTGTCTGGGTTGTCTCAGAATGGGCAGCCTGCCATGATACATAATTCTTTAACACAGAATCAGTGGCTCAAGCAAATTCCAGGAATGTCTGGCCCTGCCTCCCCGTTGCGTCTTCAACAACATCAGAGGCAGCAGCTGGCTTCATCTGGTCAACTGCAGCAAAACACTATGACCCTAAACCAACAGCAATTGTCCCAGTTGTTGCAGCAGAAGTCCATGGGGCAATCTCAGCTTCATCAGCAGCAGCCATCCTctcagcagcagcagcaacaacttttacagcagcagcagcagcagcaacaatcACAACTACAAGCATCTGttcatcaacagcaacaactGCAGTCTCCGAGGATGACAGGACCTACAGGTCAAAAGTCACTAAGTTTAACAGGATCTCAGCCAGATGCTACTGCATCTGGCACGACCACACCCGGCGGAAGTTCAAGTCAAGGTACCGAAGCAGCTACAAACCAAGTACTTGGAAAGAGAAAGATACAAGATTTAGTTGCACAGGTGGATCCACATGGTAAACTGGACCCTGAAGTTATAGATCATCTTTTAGAGCTTGCCGATGACTTCATTGATTCTGTAACTACACATGGTTGCATTTTGGCAAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTACACCTGGAGAAAAATTGGGATTTGACAGTTCCAGGATATTCAAGTGAAGAAAAGAAGTACCAGAGTAGACCTTTGTTCAATGACCTTCACAAGAGGCGGCTAGATGCGGTTCGCACATTGATGGAATCTTCTAAACTCCCCGAATCAAGTATTAACAATTCTAAAGATATCAGTAGACAGGGACATCCTAACCCTGCAGCTTCCCATCATCTAATGAGACCCCTGAGTTCAGACCAGTTGGTTTCTCATTCAAGTACTTCTCAAATGCTACAGCAGACGACAAGGTTTTAA 2676 0.4017 MLGPFVDLPFHAILGDRDIGECSDLDANNVNWIARKLPGLDSSGCGAFEIGNVSFVSLNSVALLCDNSSLRFDVEKVIERESLELREETEAATKMMNHSTLSRDVNYNFFWREITVLSGSGPVLLLHLPLDQTRNKHYSGNDAFERSSSSFIERLNLVPKNRDFIGTGLYNLLHTLPLNASEYILQALRPRVIFSAHRCTFSDHVHFDTTREIIVPSMSWNARDDPGFVIATFQKTGKAVSINYCSLARESHILVIYVSILVLFCLACLKGYKELTHRIQIHLLPSIQPSFINGGTVTTTTTTQIPHFSTMAENVIGSPSSTMENPSSSNPTIPSPSPISQQQQQSPSIHMSSSSPSLSQDQQQQHSQLQHSINNINPNPNSNVSNFQLQQSLQRSPSMSRLNQIQPQQQQQQQQQVARQQLYGGQMNFGGSAAVSAQQQQLSGGGIGGNASNLSRSALIGQSGHFPMLSGAGGAQFNLLASPRQKSGLVQSSQFSSGNSAGQSLQGMQQAIGMMGSSNLASQMRTNGALYAQQQQLRMTPAQIRQQLSQQASLSNQQVQGLPRSSSLAFMNPQLSGLSQNGQPAMIHNSLTQNQWLKQIPGMSGPASPLRLQQHQRQQLASSGQLQQNTMTLNQQQLSQLLQQKSMGQSQLHQQQPSSQQQQQQLLQQQQQQQQSQLQASVHQQQQLQSPRMTGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEAATNQVLGKRKIQDLVAQVDPHGKLDPEVIDHLLELADDFIDSVTTHGCILAKHRKSSTLESKDLLLHLEKNWDLTVPGYSSEEKKYQSRPLFNDLHKRRLDAVRTLMESSKLPESSINNSKDISRQGHPNPAASHHLMRPLSSDQLVSHSSTSQMLQQTTRF 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00631 891 CDD TAF12 735 803 IPR003228 GO:0005669|GO:0006352
Tsu08g00631 891 MobiDBLite consensus disorder prediction 609 626 - -
Tsu08g00631 891 SUPERFAMILY Histone-fold 733 804 IPR009072 GO:0046982
Tsu08g00631 891 MobiDBLite consensus disorder prediction 872 891 - -
Tsu08g00631 891 MobiDBLite consensus disorder prediction 315 413 - -
Tsu08g00631 891 MobiDBLite consensus disorder prediction 838 856 - -
Tsu08g00631 891 MobiDBLite consensus disorder prediction 836 865 - -
Tsu08g00631 891 Gene3D Histone, subunit A 730 804 IPR009072 GO:0046982
Tsu08g00631 891 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 313 890 IPR037794 GO:0000124|GO:0005669|GO:0046695
Tsu08g00631 891 MobiDBLite consensus disorder prediction 644 667 - -
Tsu08g00631 891 Pfam Transcription initiation factor TFIID subunit A 736 803 IPR003228 GO:0005669|GO:0006352
Tsu08g00631 891 MobiDBLite consensus disorder prediction 599 626 - -
Tsu08g00631 891 MobiDBLite consensus disorder prediction 681 734 - -
Tsu08g00631 891 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 313 890 - -
Tsu08g00631 891 SUPERFAMILY Metallo-dependent phosphatases 7 245 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00631 Tsu-Chr8 6834912 6854892 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00631 K03126 - gmx:100783017 558.91