Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g00630 | ATGGGTTCCGGAGGAAGACCGATATTTGAATTTGACCTCAATGAGCCAGCTACAGAGGATAATGATGAGAAGGACAGTGTTTTCTTCTTGCAGCCCCAAAAGACCCAACCATCAACAAATTCCCATGCTCCTGACTTATTTGTAGCTTCTACTGCTGCTCAAGGAATAATGAATAATCATGCATTTTCACATGCCTCAACTGTCTCGGGATTTCAACCTTTTATTCGCTCTAAATCTGGTAGTGCCCCTAGCGCTGATTCTGAGATGAAGAAAGCAGGAGATCAGGGTCCAAAGGATTCCTCTAAGTTCATTAAAGACGAGGATGTTAAAGTTAATGAATCACACATATCTGGCTTGGCAAATGCTCAATCTACTGAAAGGGAAGAAGGCGAGTGGTCTGAAGATGAGGGTGTTGCTCATGCAAATGGAGGTAATAATCTGGCACAACAAAGTCATGCTCCAGTAGAGCAAGCAACAACTGGAATGATGGATGGAAGTGTTTCAGTTGCTTCTGACAGTAAGTCTAGCAATATCAAGAGTTCTAATTCTAATAATATAATTGATGAAAAGAGTAGCCGTGTTTCTGTAGGTCTAGAATCAGATAGTAGTGAACAAAAAAACAATGGTATCCCAAATTCAGAAAGTAATATAAAAAGTGAAGCTTCTATTGATACACAGGAGGAACCCAGTTTAGTTCCCAAGCAAAAAGAGGTGAAGGGTACTGAAGCAAGTCATGCAATTAGGTGCGCAAATATTCCTGGGAAAAGGAAGATTGACCAACGAAAAGAGGAAATGCTGGGAAAGAAACGTAATAGACAGACCATGTTTCTTAACTTGGAAGATGTCAAGCAAGCAGGTCCTATTAAAACCTCAACCCCTAGAAGACAGACATTCACATCACCGGTTATAAGTCGTACTGTGAAGGAAGTTCGTACTGTTCCTGCACAAGTTGAACGTGTTGGAATAGCTAAGGATCAGAATCAAGCTGACTCCTCTGTTGGTGAAGGTGTAAGTCAAACTGAAACACACGAACCTAAATCTGATTGTAATGGTGATAATTCTGGACCATTTGGTAGGTCGAGGAGGATTAACAATGAGACAGAAACTCCTATAGAGGCCAATTTACCACCCATACCAAGACAGGGATCATGGAAACAACAGACAGATTTGAGGCAGCAGAAGAATTCATTTGTTTCTAATAGGAAGTTGGGACAGAGTGGTCAAAGCTCCAATGATGTCAGGCTGCTAAACAAGAAACATCATTCTATCAAGAAGCAAACTCCTGTCAGTTTCCAGTCCCAGGACTCATCTGTTGAACGCCTCATTCGGGAGGTAACCAGTGAAAAGTTTTGGCATCACCCAGGAGAGACCGATTTAAAGTGTGTTCCTGGAAAGTTTGAATCAGTGGAAGAGTATGTTCGAGTATTTGAGCCTTTGCTTTTTGAGGAATGCCGTGCTCAACTTTACAGCACCTGGGAAGAATCAACAGAAACAGTGTCAAGGGATACTCATATTATGGTGCGAGTGAAGGCAAATGAGTCAAGAGAAAGAGGTTGGTATGATGTGAAAGTGCTTCCAGCACACGAGTTCAAATGGTCATTTAAGGAGGGTGATGTTGCAATTCTTTCGTCCCCTAGGCCTGGATCAGTCAGATCCAAGCCGAACAATTCATCTTTAGCTCACAATGGCGGTGATTCAGAAATCACTGGACGTGTGGTGGGTACAGTTAGGCGACACATACCTATTGATACCCGTGATCCTCCTGGTGCAATACTCCATTACTATGTAGGGGATTCTTATGATCCTAGCAGGGCTGATGATGATCATATCGTAAGGAAACTTCAAACTGGAAGCATCTGGTATCTCACAGTGCTTGGTTCTCTTGCTACCAcacagagggagtatattgcTCTACACGCATTTCGTCGCTTAAATGTGCAGATGCAAAATGCAATTCTTCAGCCTAGTCCCGAACACTTCCCAAAATACGAGCAGCATACCCCGGCAATGCCTGAATGCTTCACACCGAACTTTGTTGAGTATCTGCGAAGGACCTTCAACGAACCCCAGTTGGCAGCAATCCAATGGGCGGCTATGCATACAGCTGCTGGTACAAGTAGTGTGGCAACAAAAAGGCAAGATCCCTGGCCTTTCACTCTTGTTCAAGGACCTCCGGGAACAGGAAAAACACATACAGTATGGGGAATGTTGAATGTCATTCATCTTGTGCAGTATCAACACTACTACACCTCTTTGCTTAAGCATGTAGCTCCTGAAAGCTACAAGCAAGCTAATGAGCTTAATTCAGACCATGCCCCCACAGGATCTATTGATGAAGTTCTTCAAAACATGGACCAAAATCTCTTGCGAACTTTGCCTAAACTAGTCCCAAAGCCTAGAATGTTGGTTTGTGCTCCTTCTAATGCTGCCACTGATGAGCTTCTTTCTCGTGTCCTTGATCGTGGATTTATTGATGGAGAGATGAAAGTATATCGACCTGATGTAGCTCGGGTTGGGGTTGATTCTCAGACACGTGCTGCCCAAGCAGTTTCTGTTGAGCGGAGAACTGAACAGCTTCTGGTCAAGACTCGAGAGGAAGTTGCAGGATGGATGCAACAGCTAAGGAATCGTGAAGCACAGTATACTCAACAGTTGCATTGTCTGCATAGAGAACTGAATGCTACTGCTGCCGCTGTGCGCTCCCAAGGATCTGTTGGTGTTGACCCTGACCTTCTCATGGCCCGTGATCAGAATCGAGATGTTTTGCTACAGAACCTTGCATCTGTAGTTGAAGGCAGGGATAAGGTTCTGGTTGAGATGTCTCGCCTTGCTGTTTTGGAAGGTAGGTTTCGACCTGGTAGTGGTTTCAATTTGGAAGAGGCACGTGCTAGTTTGGAGGCCAGTTTTGCCAATGAAGCTGAAATAGTTTTCACTACAGTTTCTAGCAGTGGACGTAAGTTGTTCTCTCGTCTTTCCCATGGATTTGATATGGTAGTCATTGATGAGGCTGCCCAAGCCAGCGAGGTGGGAGTTCTTCCTCCCCTTTCACTTGGGGCAGCACGATGTGTTCTTGTTGGAGATCCTCAGCAGCTTCCTGCTACAGTTATCAGCAAGGCTGCAGGAACATTGATGTATAGCAGGAGTCTTTTTGAAAGGTTCCAACAAGCAGGATGCCCAACAATGCTGTTGTCTGTGCAATATAGAATGCATCCCCAAATTCGGGATTTTCCCTCTAGATACTTTTATCAGGGGCGCCTTAGTGACAGTGAAAGTGTGGTTAAACTGCCCGATGAAGCATACTATAAAGATCCTTTACTCAGACCTTATATATTCTATGATATCAGACATGGGCGGGAGTCTCACAGAGGTGGGTCAGTCTCCTACCAAAACATACACGAAGCACAATTTTGTCTCCGATTGTATGAGCATATTCAGAAAACGGTGAAATCTTTGGGTCTGCCAAAGATTACCGTTGGCATAATTACTCCTTACAAGCTGCAGTTGAAATGCCTCCAACGCGAGTTTGAGGAAGTCTTAAATTCAGAAGAAGGGAAGGATTTATATATCAACACAGTAGATGCTTTCCAAGGTCAAGAGCGTGATGTGATCATTATGTCTTGTGTGCGTGCATCAAGTCACGGGGTTGGTTTTGTTGCTGATATACGTCGAATGAATGTTGCCCTTACGCGTGCAAGAAGGGCCCTTTGGGTGATGGGAAATGCAAATGCTCTGATACAATCCGAAGATTGGGCTGCTTTGATTGAAGATGCAAGGTCCCGAAATTGCTACATGGACATGGATTCTCTTCCCAAGGATTTTCTGGTGACCAAGGGACCTGTTTACACACCATTGCCTGGTAAGGCACCCACGAATATGAGGGGAATGAGATCAGGTGGACCAAGATATAGATCAATGGAGATGCATATGGAATCCAGGGTGGGATCACCATCTGTAGATGATGAGAGGATGAATGGCGCCTCAGTAAGCTCCAGAAATGGGAATCATCGTCCATCAAGATATTTAACAGAGAACTCCTTAGATGATTCTGATCATTTGGGTGATAAATCCAGAGATGCCTGGCAGCATGGCATACAAAAGAGGCAGGGTTCAACTGGAACCATGGCAAAGAGAGACGTATAG | 4140 | 0.4408 | MGSGGRPIFEFDLNEPATEDNDEKDSVFFLQPQKTQPSTNSHAPDLFVASTAAQGIMNNHAFSHASTVSGFQPFIRSKSGSAPSADSEMKKAGDQGPKDSSKFIKDEDVKVNESHISGLANAQSTEREEGEWSEDEGVAHANGGNNLAQQSHAPVEQATTGMMDGSVSVASDSKSSNIKSSNSNNIIDEKSSRVSVGLESDSSEQKNNGIPNSESNIKSEASIDTQEEPSLVPKQKEVKGTEASHAIRCANIPGKRKIDQRKEEMLGKKRNRQTMFLNLEDVKQAGPIKTSTPRRQTFTSPVISRTVKEVRTVPAQVERVGIAKDQNQADSSVGEGVSQTETHEPKSDCNGDNSGPFGRSRRINNETETPIEANLPPIPRQGSWKQQTDLRQQKNSFVSNRKLGQSGQSSNDVRLLNKKHHSIKKQTPVSFQSQDSSVERLIREVTSEKFWHHPGETDLKCVPGKFESVEEYVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVLPAHEFKWSFKEGDVAILSSPRPGSVRSKPNNSSLAHNGGDSEITGRVVGTVRRHIPIDTRDPPGAILHYYVGDSYDPSRADDDHIVRKLQTGSIWYLTVLGSLATTQREYIALHAFRRLNVQMQNAILQPSPEHFPKYEQHTPAMPECFTPNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSVATKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKQANELNSDHAPTGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKTREEVAGWMQQLRNREAQYTQQLHCLHRELNATAAAVRSQGSVGVDPDLLMARDQNRDVLLQNLASVVEGRDKVLVEMSRLAVLEGRFRPGSGFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLSDSESVVKLPDEAYYKDPLLRPYIFYDIRHGRESHRGGSVSYQNIHEAQFCLRLYEHIQKTVKSLGLPKITVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIEDARSRNCYMDMDSLPKDFLVTKGPVYTPLPGKAPTNMRGMRSGGPRYRSMEMHMESRVGSPSVDDERMNGASVSSRNGNHRPSRYLTENSLDDSDHLGDKSRDAWQHGIQKRQGSTGTMAKRDV | 1379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 1322 | 1340 | - | - | |
| Tsu08g00630 | 1379 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 685 | 1270 | IPR027417 | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 322 | 410 | - | - | |
| Tsu08g00630 | 1379 | Pfam | AAA domain | 692 | 1038 | IPR041677 | GO:0004386 | |
| Tsu08g00630 | 1379 | PANTHER | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED | 1 | 1340 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 545 | 568 | - | - | |
| Tsu08g00630 | 1379 | CDD | SF1_C_Upf1 | 1069 | 1258 | IPR041679 | - | |
| Tsu08g00630 | 1379 | Pfam | AAA domain | 1045 | 1241 | IPR041679 | - | |
| Tsu08g00630 | 1379 | PANTHER | DNA2/NAM7 HELICASE FAMILY | 1 | 1340 | IPR045055 | - | |
| Tsu08g00630 | 1379 | Gene3D | - | 1067 | 1273 | IPR027417 | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 548 | 564 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 165 | 229 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 380 | 410 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 353 | 371 | - | - | |
| Tsu08g00630 | 1379 | Coils | Coil | 871 | 891 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 165 | 244 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 1341 | 1362 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 1309 | 1379 | - | - | |
| Tsu08g00630 | 1379 | Gene3D | - | 618 | 1066 | IPR027417 | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 325 | 340 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 91 | 113 | - | - | |
| Tsu08g00630 | 1379 | CDD | DEXXQc_SETX | 686 | 1068 | - | - | |
| Tsu08g00630 | 1379 | MobiDBLite | consensus disorder prediction | 77 | 152 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g00630 | Tsu-Chr8 | 6812889 | 6820825 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g00630 | - | K10706 | gmx:100794516 | 2318.89 |