Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00602 ATGAACCACCATGCTACCTTAAGGAGcttatgttgttttgtttatcTTGGGCTTGTTTCCACATTAATCAAGTTTGAAGcaacaaaaacagaaattaaagaTTCTAACACACCTCAATCTCATATCAACCATGATGTCTTTATCAGCTTTCGAGGTTCAGACATCCGCCAAGGTTTTCTTAGCCACTTAGTTGATGCTCTCcatgaaaaacaaattattgcTTTTGTAGATAATCAGATTCACAAAGGAGATGAAATAGCACAACCACTTTTTCAAGCAATTGAAACATCATTTATTTCTTTGGTTATATTCTCTCAAAACTATGCTTCTTCGCGATGGTGCTTAGATGAACTTGTCAAAATTGTTGAGTGTAGAGAGAAAAATGGACAGATTTTAGTGCCTGTTTTCTACAGAGTGGACCCTACAATTGTGAGGTATCAAAATGGAACTTATGCTAATGCATTTGCTGAACAtgaaaaaaagttcaatttgAGGAAGGTGCAAGATTGGAAATCTGTTTTGAAGGAATGTGCTATTATCTCTGGGTACCCTTCATCGATGTATGCGAATGATTCTGTGCTTGTTAAAGAAATAGTTCAATATGTGCTGAGTATTCCTTTAGTTCTGAAAGAACTAGGTCATTTTATTGGTGGAAAAGATAGAGAGACATTGAAAAGCGAATGTAAGAGGCTAACAAGAGTGCCGTTGAAAAATGTTCATGATGCTATTAGATTGAGTTGTAATTATCTCAATGGTGTTGATGAAATTGTTGAGtgtagagagaaagatgaaCCGATTTTATTGACTCGACCCTACGAAATGTACACAAGAAGGAGATATCACAGGAGAACTTATCTTGATGCATTTGCTGAACATGACACTTATCTCGATGCATTTGCTGAACATGACACTAATTCGACGACGGCGAAACAATTGAATTATGAATTTGCTGGTATCTCTGGACATCCTTTTATGAATTTGCTGGTATCTCTGGACATCCTTTTTCATGGATGTTTGCGAATGATTCTGTATTCAAAAGATGTCCGTGCCATCGGCATTTGGGGTATGGCTGGTATTGGGAAAACAAATATTGCAGAACAAGTATTCAACAGACGATGTTCTGAATATGACAATTGTTGCTTTAAGGCTAATGTTAGAGAAGAATGGGAGAGAGATGGAAGGATGCATTTAAAGAATGAGCTTTATTCTGCTCTGTTAAGAATAGAAGATTTGAATATTGAAAGACCACATGGATTGCCCTATTTTGTTGAGAGGAGACTTCGAAATATGAAGGTTCTTGTTGTTCTTGACGATGTTAGTGATGAAGAGCAactagaaattttaattgaaacaCTTGATTGGTTTGGAAGAGTTAGTAGAATCATCATAACTTCAAGAGATAAACAAGTATTCCTCAACCGggttgatgataatgatgtctATGAGGTTGAAGACATTAGAAATGCATGGTCTTGA 1476 0.3367 MNHHATLRSLCCFVYLGLVSTLIKFEATKTEIKDSNTPQSHINHDVFISFRGSDIRQGFLSHLVDALHEKQIIAFVDNQIHKGDEIAQPLFQAIETSFISLVIFSQNYASSRWCLDELVKIVECREKNGQILVPVFYRVDPTIVRYQNGTYANAFAEHEKKFNLRKVQDWKSVLKECAIISGYPSSMYANDSVLVKEIVQYVLSIPLVLKELGHFIGGKDRETLKSECKRLTRVPLKNVHDAIRLSCNYLNGVDEIVECREKDEPILLTRPYEMYTRRRYHRRTYLDAFAEHDTYLDAFAEHDTNSTTAKQLNYEFAGISGHPFMNLLVSLDILFHGCLRMILYSKDVRAIGIWGMAGIGKTNIAEQVFNRRCSEYDNCCFKANVREEWERDGRMHLKNELYSALLRIEDLNIERPHGLPYFVERRLRNMKVLVVLDDVSDEEQLEILIETLDWFGRVSRIIITSRDKQVFLNRVDDNDVYEVEDIRNAWS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00602 491 Pfam TIR domain 44 208 IPR000157 GO:0007165
Tsu08g00602 491 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 37 203 - -
Tsu08g00602 491 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 345 480 - -
Tsu08g00602 491 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 199 251 - -
Tsu08g00602 491 SMART till_3 43 180 IPR000157 GO:0007165
Tsu08g00602 491 PRINTS Disease resistance protein signature 350 365 - -
Tsu08g00602 491 PRINTS Disease resistance protein signature 426 440 - -
Tsu08g00602 491 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 199 251 IPR044974 GO:0006952
Tsu08g00602 491 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 182 IPR035897 -
Tsu08g00602 491 Gene3D - 41 207 IPR035897 -
Tsu08g00602 491 ProSiteProfiles TIR domain profile. 42 177 IPR000157 GO:0007165
Tsu08g00602 491 Gene3D - 338 477 IPR027417 -
Tsu08g00602 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 483 IPR027417 -
Tsu08g00602 491 Pfam NB-ARC domain 345 483 IPR002182 GO:0043531
Tsu08g00602 491 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 203 IPR044974 GO:0006952
Tsu08g00602 491 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 345 480 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00602 Tsu-Chr8 6530025 6536818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00602 44 202 Miscellaneous Gene Families AT1G57670 36.478 1.67e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00602 - - mtr:MTR_8g020250 231.876