Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00596 ATGAGTTTTCTATTCGGCAGTAGAAAGACTCCCGCAGAGCTTTTGAgggaaaataaaagaatgttaGACAAGTCTATTAGAGAAATTGAAAGGGAAAGACAAGGTTTGCAGaatcaagaaaagaaattgaTTGCTGAGATTAAGAAAAATGCCAAACAAGGACAAATGGGTGCTGTGAGGGTTATGGCGAAGGATCTTATCAGAACTCGCCATCAAATAGAAAAGTTTTACAAGCTTAAATCACAACTTCAGGGCGTTTCTTTGAGAATTCagACGCTTAAATCTACTCAAGCGATGGGGGATGCTATGAAAGGAGTTACTAAAGCGATGGGTCAAATGAATAGGCAGATGAATTTGCCTTCATTACAGAAGATAATGCAAGAGTTTGAAAGACAGAATGAGAAAATGGAACTTGTTTCTGAGGTAATGGGAGATGCAATTGATGATGCTTTAGAAGGCGATGAAGAAGAGGAGGAGACAGAAGATCTTGTGAATCAGGTTCTTGATGAGATCGGAATCGATATCAACTCCGAGCTTGTGAATGCACCTGCTTCTACCTCAGTCGCTGCACCAGCGGCAAAGAACAGGGTTGCTCAGGTTGAACCAACGGGAAATGATGATGGTGGAATAGATGATGATCTACAGGCTAGGTTAGATAACCTGAGGAAAATGTGA 675 0.3926 MSFLFGSRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIAEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGDAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINSELVNAPASTSVAAPAAKNRVAQVEPTGNDDGGIDDDLQARLDNLRKM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00596 224 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 224 IPR005024 GO:0007034
Tsu08g00596 224 Pfam Snf7 17 185 IPR005024 GO:0007034
Tsu08g00596 224 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 224 - -
Tsu08g00596 224 Gene3D - 6 181 - -
Tsu08g00596 224 Coils Coil 12 46 - -
Tsu08g00596 224 MobiDBLite consensus disorder prediction 186 213 - -
Tsu08g00596 224 Coils Coil 119 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00596 Tsu-Chr8 6482256 6485187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00596 K12191 - thj:104815322 363.229