Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00589 ATGAATTTGCAACAAGTTGGGCAGCCTAAATCATCTAATGGATATGGTCGTCGGAAATCTGATAAGGACGGGGCATCTAAATCGGATAGTAAGATTCCCCCAGGAAAATCAAATGTTGGCAGATTAGCGAGTACAGGTGCAGTGACTGGTAGTAAAGGTGGTAGTTATGAGAGTCCTTCGCGTGATCGACTAGTCTATTTAACAACATGCCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCTACAAATACTGAGAAAGATTTTGGAGTCATTTTGAAAATGGCTTGCTTGACAAAGGATGGCTCTTCGCAAGGGCAGAGCTCTGGTGTTGAATTCGTCAGCAAAGCGCCTTCTAAGACTTTAATTATACCTGGCAAAGAACTTGTACAAGTCATAGCAAAGGATGTTGCTGTTTCTAGAGGCGACCTAGCCAGTGAATCCAACTATGATGTGCATCAGGAGATCATGGTTGATTCAGTAATATCTCAACCTCGTCATGTTGAGTCAGGGAGAGAATTACACCGATGGGTACCTGATGAAGATGTTCCACAATGCCCTGAACTGGACAATATCTTTGATGGCTCCTGGAATAGGGGATGGGATCagtttgaaacaaataaaatgttgTTTGGGGTGAAAAGCACATTTGACGAGGAACTCTATACAACAAAGCTTGAAAAAGGGCCTCAGATGAGAGAATTGGAAATGCAAGCTCTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCACCTAGCAGAGGAACGAGGCCTTTACCCTGATGACTTTGACATTGATGAAGAGACCAGATTCTCTTCTGTATACAGGGGTAAAGGTGTTGACGATGAATAcaatgaaaatgaagacaatTTGTTGGATTCACACAATTCTGAAACGTTTGGTGATGTGTCCGATTCAGTCATAAAGAGACCAGGAAAGTCATCTCAGTCAAAAACTGGTGGGGATTTAAGCCACTCTGGTTCTTATGATCATGCTAAGCAGTTACCATCTGAACTCCCTGGCCAAAGTTACTCATTTTCAGATGGGGAGAGCAGGATTCAGGATAATTCAGTTTGTGATCTACACGGAGCCAATGGTAACACCAAGGAAGAAAATCACAAGCAAGCTGAGGATGTCCAGCCGGTGAAATATGAGGATTTACACTCAGCACTCAACTTGAAGAAAGATGACTCTGATAAAGGGGGATTATCTTCTACTAATGCCTCCTCCTATGCCTCGTCTACTCATGTTTCATCGaagattgatgaaaaaaaaactgGATCACATGGAGACTTGACTGGGGGTTCAGATTCTGGCAAAGCAAGTTGGGAAACGAAGCCCTTAAATTCACGTGGAAGATCAGAAACTCGTGTATCATCTGGTTCAGATCATGTAGCAGGTGTGGCAACATATTCTGGTCCTAGTCTGTCTCCAAGTTCTTCACTTGGTTCACTATCTTCCGAAAAATCAACTCTGAATCCCTATGCGAAGGAATTTAAGCTGAACCCTAATGCTAAGAGTTTTGTTCCGTCTCAAGCATCTGTTAGGCCTCGCTCCCCAGTGTCTGATGGTTCCTTCTATTTCCCAGCTAATGTATCTAGTGTACCGAGTATGCCAACCATGCCAATGGGTGTTGGAGTAAGTATTTCATGGAAAGATATTGTCAAATCTACAATGAATTGA 1725 0.4157 MNLQQVGQPKSSNGYGRRKSDKDGASKSDSKIPPGKSNVGRLASTGAVTGSKGGSYESPSRDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGVILKMACLTKDGSSQGQSSGVEFVSKAPSKTLIIPGKELVQVIAKDVAVSRGDLASESNYDVHQEIMVDSVISQPRHVESGRELHRWVPDEDVPQCPELDNIFDGSWNRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPQMRELEMQALRIAREIEGEETQDLHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDEYNENEDNLLDSHNSETFGDVSDSVIKRPGKSSQSKTGGDLSHSGSYDHAKQLPSELPGQSYSFSDGESRIQDNSVCDLHGANGNTKEENHKQAEDVQPVKYEDLHSALNLKKDDSDKGGLSSTNASSYASSTHVSSKIDEKKTGSHGDLTGGSDSGKASWETKPLNSRGRSETRVSSGSDHVAGVATYSGPSLSPSSSLGSLSSEKSTLNPYAKEFKLNPNAKSFVPSQASVRPRSPVSDGSFYFPANVSSVPSMPTMPMGVGVSISWKDIVKSTMN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00589 574 Coils Coil 242 262 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 352 377 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 416 431 - -
Tsu08g00589 574 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Tsu08g00589 574 Pfam LsmAD domain 221 290 IPR009604 -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 293 309 - -
Tsu08g00589 574 PANTHER ATAXIN-2 HOMOLOG 4 562 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 310 338 - -
Tsu08g00589 574 PANTHER ATAXIN 2-RELATED 4 562 IPR045117 GO:0003723
Tsu08g00589 574 MobiDBLite consensus disorder prediction 445 501 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 407 501 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 15 29 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 1 58 - -
Tsu08g00589 574 SMART LsmAD_2 221 291 IPR009604 -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 293 393 - -
Tsu08g00589 574 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00589 Tsu-Chr8 6379737 6386905 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00589 - - mtr:MTR_8g019560 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00589 08 6379737 6386905 Tsu08g00589 08 6379737 6386905 ECH