Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g00558 | ATGGCTTCTCATTTACTCAATCATTCCAAAAAGTTACGAAATGCTTCGAGTTTGTTACACCACGACCGTGCTCTTTTGATTCGTTGGTTTTGCAGCGATGTTCAACCTTCATCTATCAACAGAAATCgtgATGTGCGGAAAACTCGATTACAAGATTGCAATTCTTCAGCGAGAAACCGTGTCTTTGAATCAGCTCCCAACTTTACTAAGAGAAACATGTCCACCATGAAAAGGGGTTACATGAGGGAGTCGTTGTTGAATGGAGAGATTTCACAAAATTCACAGGTTCTGTCAAGGAGAGGCTATGCATCAGCTTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCGCCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTgataaagctACAGTTGAAATGGAGTGCATGGAGGAAGGTTATCTGGCCAAAATAGTACGTAAGGAGggggaaaaagaaattaaagttgGTGAGGTAATTGCTGTAACTGTTGAAGATGAGGAGGACATTGCAAAGTTTAAAGATTACCAACCTTCAGCATCTGAATCTAGTGCCCCCCCTGCCAAAGAAGAATCTGCCCCACCTCCCCCAAAGAAAGAGGCAGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGCTGCCAAACCTAGTGCACCACCTTCATCCGGAGATCGCATATTTGCTAGTCCCCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTgaatctctccagcattaaaggAACTGGACCTGATGGACTCATCGTCAAGGGTGACATTGACGATTACTTGGCTTCTGGTGCTAAAGAAGTTTCAACACCCTCAAAGGCCAAGGCTGCAGCAACAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATAAGGAAGGTCACAGCTTCACGTTTGTTGCTATCAAAACAAACTATTCCTCATTACTATTTGACAGTAGATACATGTGTTGACAAACTTATGAGCTTGCGTGCCCAACTCAATTCATTGCAGGAAGCCTCTGGTGGTTCCCGCATATCAGTAAATGATCTTGTAATCAAggCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAGTGTAACAGTTCATGGACAAATGACTATATTCGCCAGTATCATAATGTGAATGTTAATGTTGCTGTGCAGACTGATCATGGACTATTTGTTCCAGTAGTCAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGTGAAGAGGTCAAACAGTTGGCAAAGAAAGCCAAAGAAAACAGTTTGAAACCCCAAGACTATGAGGGAGGTACATTTACGGTGTCTAACTTGGGAGGGCCATTTGGTGTCAAACAGTTCTGTGCCATTGTCAATCCTCCTCAATCAGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCGTTCCAGGTTCGGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGGCCGTGACCCTAAGTTGTGATCATCGTGTAATAGATGGGGCGATTGGTGCGGAATGGTTAAAAGCATTCAAAGGCTATATTGAGAACCCAGAAACCATGTTGTTGTAA | 1626 | 0.4287 | MASHLLNHSKKLRNASSLLHHDRALLIRWFCSDVQPSSINRNRDVRKTRLQDCNSSARNRVFESAPNFTKRNMSTMKRGYMRESLLNGEISQNSQVLSRRGYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVRKEGEKEIKVGEVIAVTVEDEEDIAKFKDYQPSASESSAPPAKEESAPPPPKKEAVEEPAREPEPKAAKPSAPPSSGDRIFASPLARKLAEEKNVNLSSIKGTGPDGLIVKGDIDDYLASGAKEVSTPSKAKAAATDAALDYTDIPVSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLMSLRAQLNSLQEASGGSRISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNVNVAVQTDHGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIVNPPQSGILAVGSAERRVVPGSGAEEFKFASFMAVTLSCDHRVIDGAIGAEWLKAFKGYIENPETMLL | 541 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00558 | 541 | MobiDBLite | consensus disorder prediction | 216 | 234 | - | - | |
| Tsu08g00558 | 541 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 111 | 187 | IPR000089 | - | |
| Tsu08g00558 | 541 | SUPERFAMILY | CoA-dependent acyltransferases | 310 | 541 | - | - | |
| Tsu08g00558 | 541 | ProSiteProfiles | Peripheral subunit-binding (PSBD) domain profile. | 250 | 287 | IPR004167 | GO:0016746 | |
| Tsu08g00558 | 541 | SUPERFAMILY | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 243 | 288 | IPR036625 | GO:0016746 | |
| Tsu08g00558 | 541 | CDD | lipoyl_domain | 112 | 185 | - | - | |
| Tsu08g00558 | 541 | TIGRFAM | PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | 113 | 541 | IPR006257 | GO:0004742|GO:0006090|GO:0045254 | |
| Tsu08g00558 | 541 | Gene3D | - | 106 | 212 | - | - | |
| Tsu08g00558 | 541 | Gene3D | - | 294 | 539 | IPR023213 | - | |
| Tsu08g00558 | 541 | PANTHER | DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL | 46 | 541 | - | - | |
| Tsu08g00558 | 541 | Pfam | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 310 | 541 | IPR001078 | GO:0016746 | |
| Tsu08g00558 | 541 | Coils | Coil | 341 | 361 | - | - | |
| Tsu08g00558 | 541 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 136 | 165 | IPR003016 | - | |
| Tsu08g00558 | 541 | SUPERFAMILY | Single hybrid motif | 110 | 205 | IPR011053 | - | |
| Tsu08g00558 | 541 | PANTHER | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX | 46 | 541 | - | - | |
| Tsu08g00558 | 541 | MobiDBLite | consensus disorder prediction | 199 | 249 | - | - | |
| Tsu08g00558 | 541 | Pfam | e3 binding domain | 249 | 283 | IPR004167 | GO:0016746 | |
| Tsu08g00558 | 541 | Pfam | Biotin-requiring enzyme | 113 | 185 | IPR000089 | - | |
| Tsu08g00558 | 541 | Gene3D | - | 237 | 291 | IPR036625 | GO:0016746 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g00558 | Tsu-Chr8 | 6090588 | 6097509 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00558 | 2 | 541 | Acyl Lipid Metabolism Gene Families | AT1G54220 | 67.942 | 0.0 | 751 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g00558 | K00627 | - | gmx:100778218 | 816.609 |