Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00534 ATGGCTTCATTAGTGAAAGGTATCTTTGACAAAGGCCCAAAGGTTAAGGGAACTCTTGTTTTGATGCAAAAGAATGTGTTGGATATTAATGAACTCACTGGAGCTCAAAGTGCTGGTGGTATATTTGGTGGTGCCATAGGTGCTATTACTGATATTGCTGGCTCTTTACTTGATGCAGCCACTGCTTTCTTGGGAAATTCTGTGGCTCTCAAGTTGATTAGTGCTACAAGTACTGATGCAAGTGGAAAAGGAAAAGTGGGAAAAGAAACATTTCTTAAAGGCATTATTACCTCCTTGCCAACATTGGGAGACAAACAATCTGCTTTCAACATTAGTTTTGAATGGGACAGTAGTATGGGAATTCCAGGAGCTTTTTATATCAAAAATTATATGCAGAATGAATTCTTTCTTGTGAGTTTGACCATTGAAGATATTCCAAATCAAGGAACCATCAGCTTTGTTTGCAACTCATGGATTTACAATGCTAAGAAGTACAAAACTGACCGTATTTTCTTTGCCAACAATACATACCTTCCGAGTGCAACACCAGCTCCATTAGTGTACTATAGAcaagaagaattgaagacttTAAGAGGAGATGGAACTGGAGAGCGTAAAGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGAGCCCGACAAAAAAGCTACTTTGGCTCGTCCAATTCTTGGGGGATCAAGCACCTTGCCTTACCCTCGAAGGGGAAGAACTGGTAGAAAACCAACTAGGAAAGATCCAAAGAGTGAAAGTCGAAGTGACATTGTTTACCTACCAAGAGATGAATCATTTGGTCACGTGAAGTCGTCAGACTTTCTTGTTTACATACTCAAATCTGCATCTCAAAATATCATACCTCAATTAAGATCTGTAGTTACATTACAACTCAATAATCCTGAATTTAACACCTTTGAAGATGTGCGTTCACTTTATGATGGTGGAATTAAGCTTCCTACTGATATACTAAGCGAGATCAGCCCAATTCCATTGTTCAAGGAACTTTTCCGATCTGATGGTGAATCGGCACTTAAATTTCCACCACCAAAAGTGATTCAAGTGGATCACTCTGCATGGATGACTGACGAGGAATTTGCAAGGGAGATGATTGCTGGAGTGAATCCACACATCATCAAGAAACTTTCGGAATTTCCACCAAAGAGCAAGCTAGATAGCCAACTTTATGGTGATAATACCAGCAAAATAACCAAAGAAAACTTGGAGCCAAACATGGATGAAGTCACAGTAGAACAAGCTATCCAAAACAATAGATTGTACATCCTTGATCACCATGATCCACTCTTTCCATATTTGAGGAAAATAAATGCAACTGATACAAAAGCATATGCTACTAGAACAATCCTTTTCTTGCAAAATAATGGAACTTTGAAGCCATTGGCCATTGAACTAAGTAGGCCACATCCTCAAGGTGATAGTTTTGGTCCTGTTAGTAATGTTTACACCCCTGCAAGTGAAGGTGTTGAAGCTTCAATTTGGCTCCTTGCCAAGGCTTTTGTTATTGTAAATGATTCATGCTATCACCAACTTGTTAGCCATTGGTTGAACACTCATGCTGTTGTTGAGCCATTCATCATAGCAACAAACAGACACCTTAGTGTGGTTCATCCTATTCACAAACTTTTGCTTCCACATTACCGCGACACAATGAACATTAATGCACTTGCAAGGAATGTCTTGGTCAATGCAGAGGGTATTATAGAATCAACATTCTTGTGGGGAGGATATGCTTTGGAAATGTCTGCTGTTGTTTACAGGGATTGGGTTTTCACTGAGCAAGGACTACCTAATGATCTAATTAAGAGAGGAGTGGCGGTTGAGGATCCAGCTTCCCCACACGGTGTTCGCCTTCTCATCGAGGACTATCCTTATGCTTCTGATGGACTAGAGATATGGGCTGCTATTAAGTCATGGGTTGACGAATATGTGAATTTCTACTACAACTCAGATGCAGCAATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAAGAACTAGTAGAGGTGGGCCATGGTGACTTGAAGAGTGCTACATGGTGGTTTAAGATGCAAACTCGTGCGGAATTGATTGAAGCTTGCACCATCCTAATATGGATTGCTTCAGCACTTCACGCAGCTGTTAATTTTGGACAATATCCATATGGAGGATACATCCTTAACCGACCAACTAAGAGTAGGAGATTCATGCCTGAGATAGGATCCCCTGAATACGATGAACTTGCTAAGAACTACGAGAAGGCTTATTTGAGGACAATCACACCGAAGAATGATACTCTTACTGACTTGACCATTATAGAGGTCTTGTCAAGACATGCTTCTGATGAGCAATACCTTGGAGAGAGAATTGAAGGTGATATTTGGACTTCTGATTCACAACCAAAAGAGGCCTATAAGAGGTTTGGAAAGAAATTGGCTGAAATTGAACAAAAACTCACTCAAAGGAACAATGATGAGACACTGAGGAATCGTTATGGACCAGTGAACATGCCGTATACTTTGCTTTATCCTTCGAGTGAGGAAGGATTGACTTTCAGAGGCATTCCCAACAGTATCTCTATCTAA 2607 0.3993 MASLVKGIFDKGPKVKGTLVLMQKNVLDINELTGAQSAGGIFGGAIGAITDIAGSLLDAATAFLGNSVALKLISATSTDASGKGKVGKETFLKGIITSLPTLGDKQSAFNISFEWDSSMGIPGAFYIKNYMQNEFFLVSLTIEDIPNQGTISFVCNSWIYNAKKYKTDRIFFANNTYLPSATPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDKKATLARPILGGSSTLPYPRRGRTGRKPTRKDPKSESRSDIVYLPRDESFGHVKSSDFLVYILKSASQNIIPQLRSVVTLQLNNPEFNTFEDVRSLYDGGIKLPTDILSEISPIPLFKELFRSDGESALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQLYGDNTSKITKENLEPNMDEVTVEQAIQNNRLYILDHHDPLFPYLRKINATDTKAYATRTILFLQNNGTLKPLAIELSRPHPQGDSFGPVSNVYTPASEGVEASIWLLAKAFVIVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGGYALEMSAVVYRDWVFTEQGLPNDLIKRGVAVEDPASPHGVRLLIEDYPYASDGLEIWAAIKSWVDEYVNFYYNSDAAIAQDSELQAFWKELVEVGHGDLKSATWWFKMQTRAELIEACTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEIGSPEYDELAKNYEKAYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDIWTSDSQPKEAYKRFGKKLAEIEQKLTQRNNDETLRNRYGPVNMPYTLLYPSSEEGLTFRGIPNSISI 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00534 868 Gene3D - 367 500 - -
Tsu08g00534 868 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Tsu08g00534 868 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 868 - -
Tsu08g00534 868 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Tsu08g00534 868 Gene3D - 501 867 - -
Tsu08g00534 868 PANTHER LIPOXYGENASE 7 868 IPR000907 GO:0016702|GO:0046872
Tsu08g00534 868 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 868 IPR013819 GO:0016702|GO:0046872
Tsu08g00534 868 Gene3D - 278 366 IPR027433 -
Tsu08g00534 868 SUPERFAMILY Lipoxigenase 178 868 IPR036226 -
Tsu08g00534 868 Gene3D - 178 277 - -
Tsu08g00534 868 ProSiteProfiles PLAT domain profile. 45 173 IPR001024 GO:0005515
Tsu08g00534 868 SMART LH2_4 13 174 IPR001024 GO:0005515
Tsu08g00534 868 Pfam Lipoxygenase 186 851 IPR013819 GO:0016702|GO:0046872
Tsu08g00534 868 MobiDBLite consensus disorder prediction 233 262 - -
Tsu08g00534 868 Pfam PLAT/LH2 domain 78 172 IPR001024 GO:0005515
Tsu08g00534 868 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
Tsu08g00534 868 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Tsu08g00534 868 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Tsu08g00534 868 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Tsu08g00534 868 Gene3D PLAT/LH2 domain 4 177 - -
Tsu08g00534 868 CDD PLAT_LH2 14 174 IPR042057 -
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Tsu08g00534 868 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00534 Tsu-Chr8 5732825 5737175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00534 14 868 Acyl Lipid Metabolism Gene Families AT3G22400 55.479 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00534 K15718 - gmx:100816880 1431.77