Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00532 ATGGATTTACAATGCTCAAAAGTACACAACTGCACGCGTCTTCTTTGCCAACAAgATCCAAAAAGTGAGAAACGAAGTGACAATGTTTACCTTCCAAGAGATGAATCATTTGGTCACTTGAAATCTTCAGATTTTCTTGTTTACATACTTAAATCAGTATCTCAAAATGTCATACCCATATTGACATCTGCAGTTACATTACAATTCAATAAACCTGAGTTTGATAGCTTTGAAGATGTGCGTACGTTCTATGAGGGTGGAATTAAATTGCCTACTAATACACTTAGCAAATTCAGCCCCATACCATTTTTCAAGGAACTCCTCCGAACTGACGGTGAAGCACCCTTAAAGTTTCCATTGCCTAAAGTGGTTCAAGTGAATAAATCTGGATGGATGACTGATGAAGAATTTACAAGAGAGATGATTGCTGGTGTTAATCCACACATCATCAAAAGACTTCAGGAGTTTCCACCAAAGAGCAAACTAGATAGACAACTCTTCGGTGATAATACCAGCACAGTAACCAAAGAACAATTAGAACCAAACATGGGTGGAGTCACAGTTGAACAAGCAATCAAAACAAACAGGCTGTATATACTTGATCACCATGATGCATTTTATCcatatttgagaaaaataaatgcagCTGATACAAAAGCATATGCTAGTAGAACCTTCCTTTTCTTACAAGATGATGGAACTTTGAAGCCATTGGCCATTGAGCTAAGTAGCCCACATCCACAAGCTGATAGCTTTGGTCCTGTTAGTGATATTTACTTGCCTGCAAGTGAAGGTGTTGAAGCTTCTATTTGGCTACTTGCCAAGGCCTATGTTGTTGTAAATGACTCATGCCATCACCAACTCATCAGTCATTGGTTGAATACTCATGCTGTTGTTGAGCCATTCATCATAGCAACAAATAGGCATCTTAGTGTGGTTCATCCTATTCATAAACTTCTACTTCCACACTATCGCGACACAATGAACATTAACGCGCTTGCAAGGAATGCTTTGGTAAATGCAAATGGTGTTATTGAAACGACATTCTTGTTAGGAAGTTATTCTTTAGAATTGTCTGCTGTAGTGTATAAGGATTGGGTTTTCCCTGATCAAGGTTTGCCAAATGATTTACTCAAAAGGGGAATGGCCGTAGAGGATCCAACTTCCCCACATGGCCTTCGCCTTCTGATAGAGGACTATCCTTATGCTGCTGATGGACTGGAGATATGGGATGCTATTAAGACATGGGTTGATGAATATGTGAATTTCTACTACAAGTCAGATGCAGATATTGTACAAGATTCTGAACTCCAAGCATTTTGGAAAGAACTTGTAGAGGTGGGTCACGGTGACTTGAAGAATCCAACATGGTGGTATAAGATGCAAAATCGTATGGAGTTGATTGAAGCTTGCACTACCCTCATATGGATTGCTTCGGCACTTCATGCAGCTGTTAATTTTGGACAATATCCTTACGGAGGATTAATCCTTAACCGACCAACTAAAAGTAGAAGATTAATGCCTAAGAAAGGATCCCCTGAGTATGATGAGCTTGCTAAGAACTACCAGAAGGTGTTTTTGAGGACAATCACACCAAAGAATGATACCCTTCTTGACTTGACCATCATAGAGATCTTGTCAAGACATGCTTCTGATGAACAATATCTTGGACAAAGAATTGAAGGTGATCTTTGGACTTCTGATTCACAACCAATAGTGGCTTTCAAGAGGTTCGCGTCGAAGTTGGCTGAAATTGAGCTAAAACTCACTGAAAGGAACAATGATAAGGCTCTAAGGAATCGATACGGACCGGTGAATATGCCATATACTTTGCTTTATCCTTCTAGTAAGGAAGGATTGACTTGCAGAGGCATTCCCAATAGTATTTCCATCTAA 1896 0.3908 MDLQCSKVHNCTRLLCQQDPKSEKRSDNVYLPRDESFGHLKSSDFLVYILKSVSQNVIPILTSAVTLQFNKPEFDSFEDVRTFYEGGIKLPTNTLSKFSPIPFFKELLRTDGEAPLKFPLPKVVQVNKSGWMTDEEFTREMIAGVNPHIIKRLQEFPPKSKLDRQLFGDNTSTVTKEQLEPNMGGVTVEQAIKTNRLYILDHHDAFYPYLRKINAADTKAYASRTFLFLQDDGTLKPLAIELSSPHPQADSFGPVSDIYLPASEGVEASIWLLAKAYVVVNDSCHHQLISHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNALVNANGVIETTFLLGSYSLELSAVVYKDWVFPDQGLPNDLLKRGMAVEDPTSPHGLRLLIEDYPYAADGLEIWDAIKTWVDEYVNFYYKSDADIVQDSELQAFWKELVEVGHGDLKNPTWWYKMQNRMELIEACTTLIWIASALHAAVNFGQYPYGGLILNRPTKSRRLMPKKGSPEYDELAKNYQKVFLRTITPKNDTLLDLTIIEILSRHASDEQYLGQRIEGDLWTSDSQPIVAFKRFASKLAEIELKLTERNNDKALRNRYGPVNMPYTLLYPSSKEGLTCRGIPNSISI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00532 631 Coils Coil 580 600 - -
Tsu08g00532 631 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 13 631 - -
Tsu08g00532 631 SUPERFAMILY Lipoxigenase 12 631 IPR036226 -
Tsu08g00532 631 PANTHER LIPOXYGENASE 13 631 IPR000907 GO:0016702|GO:0046872
Tsu08g00532 631 Gene3D - 41 129 IPR027433 -
Tsu08g00532 631 PRINTS Lipoxygenase signature 306 326 IPR013819 GO:0016702|GO:0046872
Tsu08g00532 631 PRINTS Lipoxygenase signature 268 285 IPR013819 GO:0016702|GO:0046872
Tsu08g00532 631 PRINTS Lipoxygenase signature 286 303 IPR013819 GO:0016702|GO:0046872
Tsu08g00532 631 Gene3D - 130 263 - -
Tsu08g00532 631 Gene3D - 264 630 - -
Tsu08g00532 631 ProSitePatterns Lipoxygenases iron-binding region signature 1. 286 300 IPR020833 GO:0016702|GO:0046872
Tsu08g00532 631 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 631 IPR013819 GO:0016702|GO:0046872
Tsu08g00532 631 Pfam Lipoxygenase 12 614 IPR013819 GO:0016702|GO:0046872
Tsu08g00532 631 ProSitePatterns Lipoxygenases iron-binding region signature 2. 313 323 IPR020834 GO:0016702|GO:0046872
Tsu08g00532 631 PRINTS Plant lipoxygenase signature 155 174 IPR001246 GO:0016491
Tsu08g00532 631 PRINTS Plant lipoxygenase signature 71 92 IPR001246 GO:0016491
Tsu08g00532 631 PRINTS Plant lipoxygenase signature 221 245 IPR001246 GO:0016491
Tsu08g00532 631 PRINTS Plant lipoxygenase signature 116 132 IPR001246 GO:0016491
Tsu08g00532 631 PRINTS Plant lipoxygenase signature 543 557 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00532 Tsu-Chr8 5597838 5604064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00532 13 631 Acyl Lipid Metabolism Gene Families AT3G22400 58.070 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00532 K15718 - gmx:100127400 1009.21