Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00530 ATGCTTCCAGGGGTGAAGAATTTAATTAACAGAGGCCAAAAGGTAAAGGGGAGAGTGGTGTTTATGCAAAAGAATGTTTTGGACATTAATGCCCTCACTTCTGCTCAAAGTCTCCCTGGTATACTTGAAGGTGGAGGCCAATTTGCTAAACGTTTTGGTAAGAATATATTTGACACCTGCACTGCTGGCTTAGGTTGTGCAGTTGCTCTCAGGTTGATTAGTGCTACCACTGCTGATGAGAGTGGAAAAGGAAAAGTGGGAGAAAGAACACTTCTTGAAGGTTTTGTTACCTCCGCACCAATTTTGGGAACAGGACAAAATACATACGATGTTCATTTCAAATGGGATAGTGAAATGGGAATTCCAGGAGCATTTTATATTGAGAATTTCATGCTAGGAGAATTCTTTCTTATAAGTCTAACCCTTGAAGATATTCCTAATCAAGGTGACATAAACTTTGTTTGCAACTCATGGATTTACAATGCTCAAAAGTACACAACTGCACGCGTCTTCTTTGCCAACAAGACATATCTTCCAAGTGAAACACCACCTCCACTAGTCTACTATAGACAAGAAGAATTAAAGACTTTACGAGGAGATGGAACAGGTAAACGTCTAGAATGGGAAAGGATCTATGATTACGATGTTTATAATGATGTGGGTAATCCTGACTGTAAAGCTAGCTTGGCCCGTCCTGTTATTGGAGGATCCAAGACCTTACCTTACCCTCGAAGGGGGAGAACCGGCAGAAAGCCATCTAAGAAAgATCCAAAAAGTGAGAAACGAAGTGACGATGTTTACATTCCAAGAGATGAATCATTTGGTCACTTGAAATCTTCGGATTTTCTTGTTTACATACTTAAATCAGTATCTCAAAATGTCATACCTATATTGACATCTGCAATTACATTACAATTCAATAAACCTGAGTTTGATAGCTTTGAAGATGTGCGTACGTTCTATGAGGGTGGAATTAAATTGCCTACTAATACACTTAGCAAATTCAGCCCCATACCATTTTTCAAGGAACTCCTCCGAAATGACGGTGAAGCACCCTTAAAGTTTCCATTGCCTAAAGTGGTTCAAGTAGTGAATAAGTCTGGATGGATGACTGATGAAGAATTTACAAGAGAGATGATTGCTGGTGTTAATCCACACATCATCAAAAGACTTCAGGAGTTCCCACCAAAGAGCAAACTAGATAAACAACTGTTCGGTGATAATACCAGCACAGTAACTAAAGAACAGTTAGAACCAAACATGAGTGGAGTTACAGTTGAACAAGCAATCCAAACAAACAGACTGTATATACTTGATCACCATGATGCATTTTATCcatatttgagaaaaataaatgcagCTGATACAAAAGCATATGCTAGTAGAACCTTCCTTTTCTTACAAGATGATGGAACTTTGAAGCCATTGGCCATTGAGCTAAGTAGCCCACATCCACAAGCTGATAGCTTTGGTCCTGTTAGTGACATTTACTTGCCTGCAAGTGAAGGTGTTGAAGCTTCTATTTGGCTACTTGCTAAGGCTTATGTTATTGTAAATGACTCATGCCATCACCAACTCATCAGTCATTGGTTGAATACTCATGCTGTTGTTGAGCCATTCATCATAGCAACAAATAGGCATCTTAGTGTGGTTCATCCTATTCATAAACTTCTACTTCCACACTACCGCGACACAATGAACATTAATGCACTTGCAAGGAATGCCTTGGTAAATGCAAATGGTGTTATTGAAACAACATTCTTGTTAGGAAGTTATTCTTTAGAATTGTCTGCTGTAGTGTATAAGGATTGGATTTTCCCTGATCAAGGTTTGCCCAATGATTTACTCAAAAGGGGAATGGCCGTAGAGGATCCAACTTCCCCACACGGCCTTCGCCTTCTGATAGAGGACTACCCTTATGCTGCTGATGGACTAGAGATATGGGCTGCTATTAAGACGTGGGTTGATGAATATGTGAATTTCTACTACAAGTCAGATGCAGATATTGTACAAGATTCTGAACTCCAAGCATTTTGGAAAGAGCTTGTAGAGGTGGGTCATGGCGACTTGAAGAATGCTACATGGTGGTATAAGATGCAAAATTGTATGGAGTTGATTGAAGCTTGCACTACCCTCATATGGATTGCTTCGGCACTTCATGCAGCGGTTAATTTTGGACAATATCCTTACGGAGGATTAATCCTTAACCGACCAACTAAAAGTAGAAGATTAATGCCTAAGAAAGGATCTCCTGAGTATGATGAGCTTGCTAAGAACTACCAGAAGGTGTTTTTGAGGACAATCACACCAAAGAATGATACCCTTCTTGACTTGACCATCATAGAGATCTTGTCAAGACATGCTTCTGATGAACAATATCTCGGACAAAGAATTGAAGGTGATCTTTGGACTTCTGATTCACAACCAATAGTGGCTTACAAGAGGTTTGGATCGAAGTTGGCTGAAATTGAGCTAAAACTCGCTGAAAGGAACAATGATCAGTCTCTAAGGAATCGATATGGACCGGTGAATATGCCATATACTTTGCTTTATCCTTCTAGTAAGGAAGGACTGACTTGTAGAGGCATTCCTAATAGTATCTCCATCTAA 2610 0.3943 MLPGVKNLINRGQKVKGRVVFMQKNVLDINALTSAQSLPGILEGGGQFAKRFGKNIFDTCTAGLGCAVALRLISATTADESGKGKVGERTLLEGFVTSAPILGTGQNTYDVHFKWDSEMGIPGAFYIENFMLGEFFLISLTLEDIPNQGDINFVCNSWIYNAQKYTTARVFFANKTYLPSETPPPLVYYRQEELKTLRGDGTGKRLEWERIYDYDVYNDVGNPDCKASLARPVIGGSKTLPYPRRGRTGRKPSKKDPKSEKRSDDVYIPRDESFGHLKSSDFLVYILKSVSQNVIPILTSAITLQFNKPEFDSFEDVRTFYEGGIKLPTNTLSKFSPIPFFKELLRNDGEAPLKFPLPKVVQVVNKSGWMTDEEFTREMIAGVNPHIIKRLQEFPPKSKLDKQLFGDNTSTVTKEQLEPNMSGVTVEQAIQTNRLYILDHHDAFYPYLRKINAADTKAYASRTFLFLQDDGTLKPLAIELSSPHPQADSFGPVSDIYLPASEGVEASIWLLAKAYVIVNDSCHHQLISHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNALVNANGVIETTFLLGSYSLELSAVVYKDWIFPDQGLPNDLLKRGMAVEDPTSPHGLRLLIEDYPYAADGLEIWAAIKTWVDEYVNFYYKSDADIVQDSELQAFWKELVEVGHGDLKNATWWYKMQNCMELIEACTTLIWIASALHAAVNFGQYPYGGLILNRPTKSRRLMPKKGSPEYDELAKNYQKVFLRTITPKNDTLLDLTIIEILSRHASDEQYLGQRIEGDLWTSDSQPIVAYKRFGSKLAEIELKLAERNNDQSLRNRYGPVNMPYTLLYPSSKEGLTCRGIPNSISI 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00530 869 Gene3D PLAT/LH2 domain 4 177 - -
Tsu08g00530 869 SMART LH2_4 13 174 IPR001024 GO:0005515
Tsu08g00530 869 Gene3D - 502 868 - -
Tsu08g00530 869 Pfam PLAT/LH2 domain 81 172 IPR001024 GO:0005515
Tsu08g00530 869 PRINTS Lipoxygenase signature 544 564 IPR013819 GO:0016702|GO:0046872
Tsu08g00530 869 PRINTS Lipoxygenase signature 524 541 IPR013819 GO:0016702|GO:0046872
Tsu08g00530 869 PRINTS Lipoxygenase signature 506 523 IPR013819 GO:0016702|GO:0046872
Tsu08g00530 869 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 869 IPR013819 GO:0016702|GO:0046872
Tsu08g00530 869 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 9 869 - -
Tsu08g00530 869 SUPERFAMILY Lipoxigenase 178 869 IPR036226 -
Tsu08g00530 869 MobiDBLite consensus disorder prediction 236 265 - -
Tsu08g00530 869 ProSitePatterns Lipoxygenases iron-binding region signature 2. 551 561 IPR020834 GO:0016702|GO:0046872
Tsu08g00530 869 Gene3D - 368 501 - -
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 781 795 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 459 483 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 393 412 IPR001246 GO:0016491
Tsu08g00530 869 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Tsu08g00530 869 PANTHER LIPOXYGENASE 9 869 IPR000907 GO:0016702|GO:0046872
Tsu08g00530 869 ProSitePatterns Lipoxygenases iron-binding region signature 1. 524 538 IPR020833 GO:0016702|GO:0046872
Tsu08g00530 869 Coils Coil 818 838 - -
Tsu08g00530 869 ProSiteProfiles PLAT domain profile. 44 173 IPR001024 GO:0005515
Tsu08g00530 869 Gene3D - 178 277 - -
Tsu08g00530 869 Pfam Lipoxygenase 186 852 IPR013819 GO:0016702|GO:0046872
Tsu08g00530 869 Gene3D - 278 367 IPR027433 -
Tsu08g00530 869 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00530 Tsu-Chr8 5537903 5579639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00530 13 869 Acyl Lipid Metabolism Gene Families AT1G55020 54.315 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00530 K15718 - gmx:100816880 1354.35