Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00529 atgtcctTTATATTTGGGAATGATAAAATCAAAGGCACATTGGTGCTTATGCAAAAGAATGTTTTGGACATAAACAGCTTAACTGATCCTGAAAAGATTATTGATGGAGCCTTGGACGGGTTTACATCGATATTTGACACACTTACTTCCTTCTTGGGTGGTTCCATTTCTCTCCAGTTAATTAGTGCTACTAAAGCTGGtttaaatggGCAAGGGAAAGTTGGAAAAGAAGCTTATTTGAAAGAGGCAATTAACAATTTGCCAACATTGGGAGACAAACAAACTGCCTTTAGTAttgaatttgaatatgataGCAACTTTGGAATTCCTGGAGCATTCAAAATTAAGAACTTTATGTCAACTGAGTTCCTACTTGTGAGCTTGACTCTTGATGATATCCCTAACATTGGAACCATTCACTTTGTTTGCAATTCCTGGATTTACAATgccaaaaaatatcaaactgaTCGCATTTTCTTCTCCAACAATACATATCTTTCAAGTGACACACCTGCTCCATTAGTCTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGAGATGGAACAGGAGAGCGCAAAGAATGGGACAGAGTTTATGATTACGATGTTTACAATGATTTGGGTGATCCCGATAAGGGTCAAAGTTATGCTCGTCCAGTTTTGGGAGGATCAAGCAGTCATCCTTATCCTCGTAGGGGAAGAACTGGCAGAAAACCAACGATCACAGATCCTAATACAGAGAGCAGAAGCAATAGTGTGTATATTCTAAGAGATGAAGCTTTTGGCCACTTGAAATCTTCAGACTTTCTAGTTTATGGACTTAAATCTGTATCTCAAGATGTAATTCCATTGATACAATCTGTATTTGACACAAACTTCACACCAAATGAATTTGATAGCTTTGATGATGTGCTTGATCTATATGAAGGAGGAATTAAGCTGCCTACAGATATACTTAGCCAAATTAGTCCTTTACCTGTGTTATCAGAAATCTTACGAACTGATGGTGAACAATTCCTCAAGTTTCCACCACCTAAAGTGATTCAAGtAGTGAGTAAGTCTGCATGGATGACTGATGAAGAGTTTGGAAGAGAGATTATTGCTGGTGTAAATCCTGGTTTAATTCGCAGCCTCCAAGAGTTTCCTCCAAAAAGTAAGCTAGATAGTGCAATCTATGGTGATCATACTAGCACAATAACCAAAGAGCACATACAGCTTAACTTAGAGGGTCTCACTGTTGATGAGgctatacaaaacaaaaaattgttcttgCTAGAACACCATGACACAATAATTCCATATCTAAGGCTAATAAATTCAACTTCCACAAAGGCCTATGCTTCAAGAACAATTCTTTTCTTGAAAAATGATGGAACTTTAAAGCCTTTGGCCATTGAGCTAAGCCTTCCACATCCACAAGGAGATCAATTTGGTGTAACTAGTAATGTCTACTTGCCTGCAATTGAAGGTGTTGAAAGTATTATTTGGCTACTTGCCAAGGCTTATGTTATAGTAAATGACTCATGCTATCATCAACTTGTGAGCCACTGGTTAAATACTCATGCAGTTGTTGAACCATTTGTCATAGCAACAAATAGACAGCTTAGTGTGCTTCATCCTATTTATAAACTATTATATCCACATTATCGTGATACCATGAATATAAATGCACTTGCTAGATCATCCTTAACATTCTTGTGGGGAGGGTATGCTATGGAGATATCTTCAAAAGTTTATAAGGATTGGATTTTTACAGATCAAGCCTTGCCTGCTGATCTTATCAAAAGGGGAATTGCGGTTGAGGATTCAACTTCTCCTCACGGTCTTCGTCTGGTGATAGAGGATTACCCTTATGCTGTTGATGGACTAGACATTTGGGACGCTATTAAGACATGGGTAAAAGACTATGTTTCCATATACTTCATATCAGATGACAAAATTCAGCAAGACTCTGAACTCCAATCTTGGTGGAAAGAAGTCGTAGAAGTTGGTCACGGTGACAAGAAAGGCGAGCCGTGGTGGCCTAAAATGCAAACTCGCGAAGACTTGATCCAAGTTTGCAGTATTATCATATGGACTGCTTCAGCTCTTCACGCGGCTGTTAATTTTGGACAATATCCATATGGAGGTTTTATATTAAACCGTCCAACCCTAAGTAGGCGATTAATGCCTGAGAAAGGTACTACTGAGTACGATGAGCTAGCGACCAATCCTCAAAAGGCTTACTTAAGAACAATTACACCAAAGTTTCAAACTCTCATTGATCTTTCAGTCATAGAAATCTTGTCAAGACATGCTTCAGATGAGTACTACCTTGGACAAAGAGACAGTGCTGAGTATTGGACTTCTGATACAAATGCCTTAGCAGCCTTCAAGAAGTTTGGAAAAACACTAGCTGAAATTGAGGGACAACTCATTCTAAGGAACAACAATGAATCATTGAGAAACAGAGTTGGGCCAGTTACTATGCCTTATACCCTTCTTTATCCTTCAAGTGAAGAGGGACTAACTTTTAGAGGGATTCCCAATAGTATCTCTATCTAA 2547 0.375 MSFIFGNDKIKGTLVLMQKNVLDINSLTDPEKIIDGALDGFTSIFDTLTSFLGGSISLQLISATKAGLNGQGKVGKEAYLKEAINNLPTLGDKQTAFSIEFEYDSNFGIPGAFKIKNFMSTEFLLVSLTLDDIPNIGTIHFVCNSWIYNAKKYQTDRIFFSNNTYLSSDTPAPLVYYRQEELKTLRGDGTGERKEWDRVYDYDVYNDLGDPDKGQSYARPVLGGSSSHPYPRRGRTGRKPTITDPNTESRSNSVYILRDEAFGHLKSSDFLVYGLKSVSQDVIPLIQSVFDTNFTPNEFDSFDDVLDLYEGGIKLPTDILSQISPLPVLSEILRTDGEQFLKFPPPKVIQVVSKSAWMTDEEFGREIIAGVNPGLIRSLQEFPPKSKLDSAIYGDHTSTITKEHIQLNLEGLTVDEAIQNKKLFLLEHHDTIIPYLRLINSTSTKAYASRTILFLKNDGTLKPLAIELSLPHPQGDQFGVTSNVYLPAIEGVESIIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRQLSVLHPIYKLLYPHYRDTMNINALARSSLTFLWGGYAMEISSKVYKDWIFTDQALPADLIKRGIAVEDSTSPHGLRLVIEDYPYAVDGLDIWDAIKTWVKDYVSIYFISDDKIQQDSELQSWWKEVVEVGHGDKKGEPWWPKMQTREDLIQVCSIIIWTASALHAAVNFGQYPYGGFILNRPTLSRRLMPEKGTTEYDELATNPQKAYLRTITPKFQTLIDLSVIEILSRHASDEYYLGQRDSAEYWTSDTNALAAFKKFGKTLAEIEGQLILRNNNESLRNRVGPVTMPYTLLYPSSEEGLTFRGIPNSISI 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00529 848 SMART LH2_4 8 162 IPR001024 GO:0005515
Tsu08g00529 848 PANTHER LIPOXYGENASE 2 848 IPR000907 GO:0016702|GO:0046872
Tsu08g00529 848 Gene3D - 490 847 - -
Tsu08g00529 848 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 165 IPR036392 GO:0005515
Tsu08g00529 848 SUPERFAMILY Lipoxigenase 167 848 IPR036226 -
Tsu08g00529 848 MobiDBLite consensus disorder prediction 211 250 - -
Tsu08g00529 848 Gene3D - 266 354 IPR027433 -
Tsu08g00529 848 PRINTS Lipoxygenase signature 532 552 IPR013819 GO:0016702|GO:0046872
Tsu08g00529 848 PRINTS Lipoxygenase signature 494 511 IPR013819 GO:0016702|GO:0046872
Tsu08g00529 848 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Tsu08g00529 848 CDD PLAT_LH2 9 162 IPR042057 -
Tsu08g00529 848 Gene3D - 355 489 - -
Tsu08g00529 848 Pfam PLAT/LH2 domain 67 160 IPR001024 GO:0005515
Tsu08g00529 848 Pfam Lipoxygenase 174 831 IPR013819 GO:0016702|GO:0046872
Tsu08g00529 848 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 2 848 - -
Tsu08g00529 848 ProSitePatterns Lipoxygenases iron-binding region signature 1. 512 526 IPR020833 GO:0016702|GO:0046872
Tsu08g00529 848 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 848 IPR013819 GO:0016702|GO:0046872
Tsu08g00529 848 ProSitePatterns Lipoxygenases iron-binding region signature 2. 539 549 IPR020834 GO:0016702|GO:0046872
Tsu08g00529 848 Gene3D PLAT/LH2 domain 2 165 - -
Tsu08g00529 848 ProSiteProfiles PLAT domain profile. 34 161 IPR001024 GO:0005515
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 447 471 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 760 774 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Tsu08g00529 848 PRINTS Plant lipoxygenase signature 381 400 IPR001246 GO:0016491
Tsu08g00529 848 Gene3D - 166 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00529 Tsu-Chr8 5527288 5533529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00529 9 848 Acyl Lipid Metabolism Gene Families AT1G55020 58.885 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00529 K15718 - gmx:547869 1333.93