Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00499 ATGCCGAAAACCAATCTTCTGGAATCTGGTTCTATCATGAAGAGGTCTAAAAGTAAAAAGACAACTTTGGCTTCTCAGAATGTGTATGATTGTGTTGCGACAGGACTCGAGGACAGGCTTGGCGACATGCCAGATTGCATTCTTCATCATATTTTGTCGTTTATGGAGACAAGAGATGCAATTCGAACTTGTGCTTTATCGAAAAGGTGGAGATATATTTGGACTTCAATTCCCTGTTTGTACTTCAACAGCAAATCATTCACACGGTTGGTTGATTTCAAGAAGTTTGTGTTGTGGGTTCTATCCCATCGCGATAATTCTCATGTCAAAGTTCTCATTTACTATCGCTTTGGGGTAGATTACGCAACAGATCAGTATCTTTTCAATAAGGTTATTGAATATGCAGCATTACATGGTGTCGAAGAGATCAGAATTAATCTTCGGGCAAAAACCTCTGGCTGTCCACCAATTGAAATTCCTTTGCCACTTTTCACTTGCCAATCCTTGAAAAGGCTCGAGTTAAAAGATTGCCATCCTACAAATGTCTCATCTCCTTTTGGTTGCAAATCATTGGACACGTTGCACCTGGAACATTTTTCAATGTTTCCTACTGCAGCCGACTTTTCAAATCCATTTGCAAGTTTGTCCGAACTTTTTGGTTTTACAACATTGACAACTTTGCACCTAAATAACTTCGCCTTATGTTATACGGGAATGGAGTGTCTTAATCCATTTGCTAAATGTTTCAATTTGAAGATTTTGCAATTAAGTGAAATGTCCTTTAAGTCAGATTTGAGTCCTAAGGATTTTGTGATATCTGCTCCCAAACTAAGTAACTTGAGTCTAATTTGCAACCGATTTAGATGTAAGATTGTAGTTGCGTCACCACAGCTTCTCGATTTCACTTACTTGTATTCCACACCTTGTGCCTTCTTTGAGTATAGTCTTCCTTCTTTGGATGGCTTGATCATTGATATTCATGAATTACATGAACCTTTGGAAAAATCTCATCGGAATAAAAGAGAGGAGACTTTACATGGTTTGATCAATATGTTACGGGGACATCATAAGGCTGAAGCTGTTAAACTATCCTTCTGTACAGTTGCGGTTACTTGTGGGGCTGCAGCCTTAGAAAAGCTGGAATGTTTGTCTTATAGTAAATGGAAGTCATTGGACTTCGGAGTGGGATCAACGTATAAAATCTTCATCAACAAACTTGACCATATAACTGCCTACTTCCGTAATTGTTCTCAGCATGTAGACTTTGAGATTGTGAATATTTAG 1284 0.384 MPKTNLLESGSIMKRSKSKKTTLASQNVYDCVATGLEDRLGDMPDCILHHILSFMETRDAIRTCALSKRWRYIWTSIPCLYFNSKSFTRLVDFKKFVLWVLSHRDNSHVKVLIYYRFGVDYATDQYLFNKVIEYAALHGVEEIRINLRAKTSGCPPIEIPLPLFTCQSLKRLELKDCHPTNVSSPFGCKSLDTLHLEHFSMFPTAADFSNPFASLSELFGFTTLTTLHLNNFALCYTGMECLNPFAKCFNLKILQLSEMSFKSDLSPKDFVISAPKLSNLSLICNRFRCKIVVASPQLLDFTYLYSTPCAFFEYSLPSLDGLIIDIHELHEPLEKSHRNKREETLHGLINMLRGHHKAEAVKLSFCTVAVTCGAAALEKLECLSYSKWKSLDFGVGSTYKIFINKLDHITAYFRNCSQHVDFEIVNI 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00499 427 PANTHER CYCLIN-LIKE F-BOX 26 427 - -
Tsu08g00499 427 ProSiteProfiles F-box domain profile. 37 90 IPR001810 GO:0005515
Tsu08g00499 427 Gene3D Ribonuclease Inhibitor 130 304 IPR032675 -
Tsu08g00499 427 SUPERFAMILY L domain-like 152 310 - -
Tsu08g00499 427 Pfam F-box domain 42 78 IPR001810 GO:0005515
Tsu08g00499 427 SMART fbox_2 43 84 IPR001810 GO:0005515
Tsu08g00499 427 PANTHER F-BOX PROTEIN-LIKE 26 427 - -
Tsu08g00499 427 Gene3D - 33 80 - -
Tsu08g00499 427 SUPERFAMILY F-box domain 38 89 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00499 Tsu-Chr8 5145103 5149477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00499 38 201 EF-hand Containing Proteins AT5G41840 27.027 2.11e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00499 - - vun:114167379 666.766