Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00478 ATGGCGGATAGTGACACTTGTTGTTCAACTCAGCTTATTGATGGAGATGGCGTATTCAATGCTTCTGGGATTGACAAGTTTATGAAGGAAGTGAAATTGGGTGAATGTGGACTTTCATATGCTGTAGTTTCTATTATGGGGCCACAGAGTAGTGGCAAAAGTACACTATTGAATAATTTGTTTAGTACCAATTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGGCATAGAGCCTTGCACAATTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTCGAAAAACAGAGTGCTCTGTTTGCTCTTGCTGTTTCAGATATAGTGCTGATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCGAATAAGCCTCTTTTGAAAACTGTCTTTCAGGTTATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTATTTGTCATACGTGATAAAACAAGGACACCACTTGAAAACTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGACACCCCGCTAAGTGAATTTTTCAACGTTCAAGTTGTTGCGCTTTCTAGTtttgaagaaaaggaagagCAATTTAGGGAGCAGGTTGCCAGCTTGAGGCAGCGTTTTCATCAGTCTATTGCTCCTGGTGGACTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGTGCTCAGGAAATATGGAAAGTCATTAAGGAAAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCCACTGTACGGTGTGAAGAAATTGCCAATGAGAAATATGCTGCTTTTGTTGCAAATGAGGATTGGCGTGAATTGGAAGAGACTGTGCAATCCGAACCTATTTCTGGATTTGGGAAGAAGATCAATTCACTCCTTCATGCTTGTTTGTCAGAGTATGATGCCGAAGCCACTTATTTCGATGAAGGTGTGAGAACTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTGCAACTTATCCAACCAGCGTACCAATCTGCACTGGGACATGTTAGATCTGGAACTTTGGACAGATTCAAGGAGGCATTTGAAAAGGCTCTGAAAGGAGGGGGAAGGTTTGCTGAAGTTGCTAATAATTGTGTTGGGTCTTGTGTGGCTCAATTTGATGAAAAATGTGCAGATGTTGTTATTGAACTAGCAAAATGGGATACATCTAAAGTACGAGAGAAACTGTTGCGTGatattgatgcacatgttacaTCTGTCCGTGAAGCTAAGATTTCTGAACTTACTTCTTCATATGAGGAAAAACTGAAACAATCTTTGTCTGGACCTGTTGAAGCTCTTTTGGATGGAGCTAATAGTGATACCTGGCCATCAGTAAGGAGCCTTCTTAAGCGTGAGATGCAATCAGCAGTTTTAGGGTATTCTACTGCGCTTGATGGGTTTGATATGGATAAAGAAACCAGACAAAACATGATTTCAAGTTTAGAGGATTTTGCAAGGGGTGTGGTAGAAGGAAAGGCCAGGGAAGAAGCTGGAAGGGTTTTAATCCGTATGAAAGACAGGTTTACAATGTTATTTAGCCATGATGCTGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGAGCCATCACTAAAACTGCTCGCTCCGCTTCTTTGAAGTTGCTAGCTGTTATGGCTGCAATTCGTTTGGATGATGGTGATAAAGATAATATTGAGAAAACATTAGCAGTTGCTTTGCTGGATGGATCAGGCATTGCTGTTAGAAGTATCACAGCGGCGACTGATCCGCTAGCTACTAGCAGTTGGGAAAAGATTCCATCATCTAAGACATTGATTACACCTGTCCAATGCAAATCGCTGTGGAGGCAATTCAAGATGGAGACAGAGTACAGTGTTTCTCAAGCCATTTCTGCACAGGAGGCCAACAAGCGTAGTAACAACTGGTTACCTCCCCCATGGGCAATACTTGCTTTGGTTATTCTGGGATTCAATGAATTTATGACTCTTCTTAAAAATCCCTTGTATTTGGGTGTCatctttgttatttttcttctcCTTAAAGCCCTGTGGGTGCAGCTTAACATCGCCGGTGAATTTCGCCATGGATTACTTCCAGGACTCATTTCCTTGTCCACCAAGTTTGTTCCAACTATCATGAACCTTATCAAAAGACTAGCAGAGGAGGGTGCCGGTGTCCCTGCTGCTAACGACAATCCTCAGAGAAGCTCAACAAAATACAACTCCAATGCTGTTCCCGTTGGTAGTTCTGTTTCGTCTAGTTCTTCATCTAACATTACCTCATCGGATAACGGAAACCGTTATACCAGTTCATCAAAAAATGAGTAA 2439 0.4141 MADSDTCCSTQLIDGDGVFNASGIDKFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFSTNFREMDAFKGRSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKDTPLSEFFNVQVVALSSFEEKEEQFREQVASLRQRFHQSIAPGGLAGDRRGVVPASGFSFSAQEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFVANEDWRELEETVQSEPISGFGKKINSLLHACLSEYDAEATYFDEGVRTAKQKQLQEKLLQLIQPAYQSALGHVRSGTLDRFKEAFEKALKGGGRFAEVANNCVGSCVAQFDEKCADVVIELAKWDTSKVREKLLRDIDAHVTSVREAKISELTSSYEEKLKQSLSGPVEALLDGANSDTWPSVRSLLKREMQSAVLGYSTALDGFDMDKETRQNMISSLEDFARGVVEGKAREEAGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRAITKTARSASLKLLAVMAAIRLDDGDKDNIEKTLAVALLDGSGIAVRSITAATDPLATSSWEKIPSSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANKRSNNWLPPPWAILALVILGFNEFMTLLKNPLYLGVIFVIFLLLKALWVQLNIAGEFRHGLLPGLISLSTKFVPTIMNLIKRLAEEGAGVPAANDNPQRSSTKYNSNAVPVGSSVSSSSSSNITSSDNGNRYTSSSKNE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00478 812 CDD GBP 36 239 - -
Tsu08g00478 812 Gene3D - 18 249 IPR027417 -
Tsu08g00478 812 Coils Coil 218 238 - -
Tsu08g00478 812 MobiDBLite consensus disorder prediction 767 812 - -
Tsu08g00478 812 Pfam Sey1 three-helix bundle domain 323 759 IPR046758 -
Tsu08g00478 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 249 IPR027417 -
Tsu08g00478 812 Hamap Protein SEY1 [SEY1]. 9 761 IPR008803 -
Tsu08g00478 812 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Tsu08g00478 812 PANTHER PROTEIN SEY1 4 789 IPR008803 -
Tsu08g00478 812 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Tsu08g00478 812 MobiDBLite consensus disorder prediction 763 812 - -
Tsu08g00478 812 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 4 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00478 Tsu-Chr8 4774039 4783429 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00478 K22698 - gmx:100777656 1318.91