Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00466 ATGGAAAATTCTCTATCTGTGACCTCAAGTTTAACGATCGGAGAAACGCTCTGTGCGGTGTTCTTTCCTCTAATCGCAATAGCTGAAACTTTGATTTATACATTAACCGGTTGCTTCAATTGTAATAATCAtgatcagaagaagaagaaagagaagaagaagttttCTACGTTCGAAGATATTCTTGCACTCGCTAATGATTCTCCgtTTAATGTGAATGAAATAGAAGCATTGCATGAATTGTACAAGAAGTTGAGTTGTTCAATCATTGATGATGGTCTTATCCATAAAGAAGAGCTTACATTGGCACTATTGAAGACCACAACAGTTGGCAAGAATCTTTTCCTTGATAGGGTCTTTGATCTCTTTGATGAAAAAAGGAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTGATACTCCTTtggaaaagaaaattgattTTGCTTTTAGATTGTATGACTTGAGGCAGACTGGATATATTGAACGAGAAGAAGTTCAGCAAATGGTGGTTGCCATTTTGTCAGAATGTGGCCTGAACTTGGGAAATGAAATCCTTGAAACCATTATTGATAAGACATTTCAAGATGTTGATGCTGACAAGGATGATAAGATCAGTAAAGAAGAGTGGAGAGATTTTGTCATTCGGAACCCATCAATCTTGAACCACCTGACTCTTCCTAATCTGAAGGACGTAACCACAGTATTTACCAGTTTCATATTCAACACTGGAGTTGAAGATTCCCACTGGTAA 774 0.3514 MENSLSVTSSLTIGETLCAVFFPLIAIAETLIYTLTGCFNCNNHDQKKKKEKKKFSTFEDILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTTTVGKNLFLDRVFDLFDEKRNGVIEFEEFVHALSVFHPDTPLEKKIDFAFRLYDLRQTGYIEREEVQQMVVAILSECGLNLGNEILETIIDKTFQDVDADKDDKISKEEWRDFVIRNPSILNHLTLPNLKDVTTVFTSFIFNTGVEDSHW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00466 257 Pfam EF-hand domain pair 151 220 IPR002048 GO:0005509
Tsu08g00466 257 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Tsu08g00466 257 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Tsu08g00466 257 PANTHER CALCINEURIN B 5 254 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tsu08g00466 257 PRINTS Recoverin family signature 166 184 - -
Tsu08g00466 257 PRINTS Recoverin family signature 212 232 - -
Tsu08g00466 257 PRINTS Recoverin family signature 119 140 - -
Tsu08g00466 257 SUPERFAMILY EF-hand 65 243 IPR011992 -
Tsu08g00466 257 ProSiteProfiles EF-hand calcium-binding domain profile. 192 227 IPR002048 GO:0005509
Tsu08g00466 257 SMART efh_1 152 180 IPR002048 GO:0005509
Tsu08g00466 257 SMART efh_1 196 224 IPR002048 GO:0005509
Tsu08g00466 257 SMART efh_1 115 143 IPR002048 GO:0005509
Tsu08g00466 257 CDD EFh 116 177 IPR002048 GO:0005509
Tsu08g00466 257 Gene3D - 62 255 - -
Tsu08g00466 257 CDD EFh 152 221 IPR002048 GO:0005509
Tsu08g00466 257 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 254 - -
Tsu08g00466 257 Pfam EF hand 116 141 IPR002048 GO:0005509
Tsu08g00466 257 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00466 Tsu-Chr8 4627425 4632306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00466 1 200 EF-hand Containing Proteins AT4G33000 60.500 7.21e-81 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00466 K06268 - gmx:100306023 385.956