Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00463 ATGGCTATGCAACCATTCGATCCTTATTACCTTTACCAGCCAGATGAACGGAGCAACATCAACACGCTCTTCGTCTCCGGTTTACCAGACGACGTAAAGGCGCGTGAGATTCACAACCTATTCCGCCGTCGTCCTGGTTTCGACTCTTGTCAACTCAAGTATACCGGCCGCGCCAATCAGGTTGTTGCATTTGCTACGTTTTTCAATCATCAATCAGCAATGGCAGCGTTGCACTCCCTAAATGGCGTGAAATTTGATCCTCAATCTGGGTCTGTTTTACATATTGAACTTGCCAGGTCAAACTCCAGGAGGAAACGAAAACCAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAGGGGGAAGCCAATGTTCAGGGATCGTCAAGTGATGATGGTGAAAGTGACCCTGATGAACCATCAGAAAATGGCAGCGACCATGGTGATATAGCAACCACACAAAGTGGTGATGCTGTTGTTGGTTCTGACAATCGTGTACCTGTGGCAAGGGAGCAACATGGAAAAGGTGGTGGTAATGGAGGACCATGTTCCACTCTTTTCATTGCAAATCTTGGTCCAAACTGCACTGAGGATGAATTAAAACAAGCTTTTTCTGTGTATGATGGATTCAACACGGTCAAGATGCGTTCTAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGTTAAGGTCATGGAGGAGCTTCAGGGAAGCTCACTTTCATCATCAGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAGAATGAGGAAGAAACGGTAG 807 0.461 MAMQPFDPYYLYQPDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHSLNGVKFDPQSGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGEANVQGSSSDDGESDPDEPSENGSDHGDIATTQSGDAVVGSDNRVPVAREQHGKGGGNGGPCSTLFIANLGPNCTEDELKQAFSVYDGFNTVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSSLSSSDRGGMHIEYARSRMRKKR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00463 268 SMART rrm1_1 22 96 IPR000504 GO:0003723
Tsu08g00463 268 SMART rrm1_1 186 258 IPR000504 GO:0003723
Tsu08g00463 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 248 IPR000504 GO:0003723
Tsu08g00463 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Tsu08g00463 268 CDD RRM_scw1_like 183 261 - -
Tsu08g00463 268 MobiDBLite consensus disorder prediction 119 162 - -
Tsu08g00463 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Tsu08g00463 268 MobiDBLite consensus disorder prediction 147 161 - -
Tsu08g00463 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Tsu08g00463 268 PANTHER RNA-BINDING PROTEIN-RELATED 14 256 - -
Tsu08g00463 268 Gene3D - 180 268 IPR012677 -
Tsu08g00463 268 SUPERFAMILY RNA-binding domain, RBD 21 246 IPR035979 GO:0003676
Tsu08g00463 268 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 14 256 - -
Tsu08g00463 268 CDD RRM_RBPMS_like 21 96 - -
Tsu08g00463 268 Gene3D - 17 108 IPR012677 -
Tsu08g00463 268 MobiDBLite consensus disorder prediction 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00463 Tsu-Chr8 4611099 4616515 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00463 - - cam:101503574 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00463 08 4611099 4616515 Tsu08g00463 08 4611099 4616515 ECH