Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00453 atggATTATATATATGCAGGTGAAATTTCATGGATTTGTATGAAGAATTTTGATTTCAATTCTTTATGTTCTCAAAGGAGCTTAATGGACACAATCAATATACTCTTTCTTTGTATCTACTTCACATCTTTGATTATTACTCTAATCAGAAAAAGTTCTACAAATGAAAGCCACAGGAAATGCTGGATTTTACTTATTGTCTCAATTTGTTGTGGTGTTATTAGCATTGCTTTTTTCAGTATTGGATTGTGGAATTTCATAGCAAAAACTGAAAACTCTGAGAAACTGAGTTGGTTAATTTGTATTATCAAAGGATTCATTTGGATTTCTTTAACAGTTTCTTTGATTGTTCAAAGAACCAAATGGATTAGAATATTAAACTCTATATGGTGGCTATGTTCTTGTGTATTGATTTCAGCTCTCAACATTGAAATTCTGATAGAAAATCATGCAATTGAAGCTTTAGATATTGTACAGTGGCTTgtccattttcttcttttgtatTGTGCCTTCAAAAATGTTGGTTATTTAGGAAATGATAGTGTTCAAGAAGGTTTATCTGAGCCACTATTAggtcaaaaaattgaaactaatcAAACAggattaggtcatgctaattTCTTCAGCAAGTTGATTTTCTGTTGGGTTAATTCTTTACTCGGTTTAGGTTACTCGAAGCCACTCGATCTTGAAGATATACCTTCTCTTGTTTCTGAAGATGAATCAAACATGGCTTATCAAAAATTTGTTGATGCTTGGGAATCACTTGTTAGAGAAAGGACTAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGTCAGAATTTacttaaaagaaaatttattaatagCATTTTATGCATTAATCAGAACTATTTCTGTTGTTGTTTCACCTTTAATATTGTATACATTTGTTAGCTACTCGAATAGAACTGAGGAAGATCTTAGAAAAGGTCTTTCCATAGTTGGTATTTTGATTGTCACCAAGGTGTTCGAGTCTTTGTCGCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTTTGATGGTGGCAGTTTACCGAAAGCAGTTAAAGCTTTCTAGCTCTGCAAGGACAAGACACTCGGCTGGCGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCGTGGTGGTTTCATAGAACATGGACTTCTGCTTTGCAACTTATTCTTTCTATTGGTGTACTTTTTTGTGTTGTTGGTATTGGTTCTCTTCCTGGTTTAGTCCCTCTTCTTATTTGTGGACTTCTCAATGTACCATTTGCAAGGATCATGCAAAATTGTCACTCACAGTTTATGATTGCACAGGACGAGCGTCTTCGGTCAACTTCAGAGATTCTGAACAGTATGAAGATCATTAAGTTACAATCATGGGATGAAAAATTCAAGAACTTAGTTGAGTCGCTACGTGATAAAGAGTTTGTATGGTTGTCGAAGGCACAAATCCTGAAAGCTACTAATTCATTTCTTTATTGGATGTCTCCTACAGTTATTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACCGTTCTCGCAACATTGAAGAACATGGGAGAACCTGTTAGAATGATCCCTGAGGCACTATCTATTATGATTCAAGTTAAGGTTTCGTTCGATCGTCTTAATAAGTTTTTGATTGATGAAGAACTAAACAATGATGATAGTGAAAGAAACTTACGGCAACATTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAAAAGATGtgaatttaaaaatcaaacggGGACTGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCGTCACTTTTACATGCAATACTTGGAGAGATTCCTAAGATTTCTGGAACTGTTAATGTTGATGGCACACTAGCCTATGTCTCTCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGAACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATTTCAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAACGATGCTGATATATATTTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAGTGATTGTGTCATGACTGCTTTAAGGAAGAAAACAGTCATTCTGGTTACTCATCAAGTGGAGTTTCTCTCAGATGTTGATACTATCTTGGTAATGGAGGGCGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTGACAGCTGGAACAACCTTTGAACTACTTGTGAGTGCTCATAAAAACACAATTACTGACTTGaatcaaaataaagaaaataaaggtTCTGAAAATGAGGTTTTGACTAAAACTCAAAGTGATGGAGAGATTTCTAGTATCAAGGGACCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAACGTTGGATGGAAGCCATTCTGggattatattaattattccaAAGGGACATTCATGCTGTGTTTGATCATTTTAGCACAATCTGGTTTTTTGGCTTTGCAGATTGCATCAACTTTTTGGCTTGCTATAGCCATtgaaattccaaaaataactaACACCACCTTGATTGGTGTTTAtgcattaatttctttttctagtTCTGCTTTGGTTTATGTAAGATCTTACTTGTCAGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGGGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTGTTCCATCACCTTTGTAGCATCTATAGCAATTGAAATTTTGGTGATAATTTGTGTAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCGTTCAGCAATATTATCAAGCCACTGCAACTCAACTAATACGGATCAATGGAACCACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAgacaaatttttcaaaaactacTTAAAACTAGTGGACACAGATGCTTCACTGTTCTTTCACTCTAATGTGACAATGGAATGTGTGGTTTTCCGAATTGAAGCACTTCAAAATTTGACTGTCATCAGTTTAGCTTTGTTGCTTATTCTATTACCTCAGGGATATGTATCCCCAGGCCTTGTTGGACTGTCTCTTTCCTATGCTTTTACCTTGACAGGAAACCAAATAAATTGGAGTAGATGGTTTTCCAATCTATCTAACTATATTATCTCAGTTGAAagaatcaaacaattcattcacATACCAGCTGAGCCTCCTGCTATTGTGGATAACAACCGACCTCCATCTTCATGGCCTTCCAAGGGCAAGATTGACCTTCAAGGTTTGGAGATTAGGTATCGTCCTAATCTTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTTATTGATGGGATGAACATTTGTTCAATGGGATTGAAGGATTTGAGGATGAGGCTAAGCATAATCCCTCAAGAACCGACTCTTTTCAAGGGTAGCATTAGAACAAACCTGGACCCTCTAGGTCTGTACTCAGATAATGAAATATGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTTTGGACGAAGCTACTGCATCCATTGACTCTGCCACAGATGCCATTCTACAAAGAGTGATTAGACAAGAATTTGTAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACAGTAATAGACAGTGACATGGTCATGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTACAAAGTTAATGGACACTAATTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCCTCACAAATATTAGCAGCCAGCAGCAATGA 4374 0.3541 MDYIYAGEISWICMKNFDFNSLCSQRSLMDTINILFLCIYFTSLIITLIRKSSTNESHRKCWILLIVSICCGVISIAFFSIGLWNFIAKTENSEKLSWLICIIKGFIWISLTVSLIVQRTKWIRILNSIWWLCSCVLISALNIEILIENHAIEALDIVQWLVHFLLLYCAFKNVGYLGNDSVQEGLSEPLLGQKIETNQTGLGHANFFSKLIFCWVNSLLGLGYSKPLDLEDIPSLVSEDESNMAYQKFVDAWESLVRERTKNNTKSLVLWSIVRIYLKENLLIAFYALIRTISVVVSPLILYTFVSYSNRTEEDLRKGLSIVGILIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHRTWTSALQLILSIGVLFCVVGIGSLPGLVPLLICGLLNVPFARIMQNCHSQFMIAQDERLRSTSEILNSMKIIKLQSWDEKFKNLVESLRDKEFVWLSKAQILKATNSFLYWMSPTVISAVVFLGCAVTKSAPLNAETIFTVLATLKNMGEPVRMIPEALSIMIQVKVSFDRLNKFLIDEELNNDDSERNLRQHSVNAVEIQDGNFIWDHESVSPTLKDVNLKIKRGLKIAVCGPVGAGKSSLLHAILGEIPKISGTVNVDGTLAYVSQSSWIQSGTVQDNILFGKPMNKTRYEKAIKACALDKDFNDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYFLDDPFSAVDAHTAAILFSDCVMTALRKKTVILVTHQVEFLSDVDTILVMEGGKVIQSGSYENLLTAGTTFELLVSAHKNTITDLNQNKENKGSENEVLTKTQSDGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLCLIILAQSGFLALQIASTFWLAIAIEIPKITNTTLIGVYALISFSSSALVYVRSYLSALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPCSITFVASIAIEILVIICVMVSVTWQVLIVAVPAMVASIFVQQYYQATATQLIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDKFFKNYLKLVDTDASLFFHSNVTMECVVFRIEALQNLTVISLALLLILLPQGYVSPGLVGLSLSYAFTLTGNQINWSRWFSNLSNYIISVERIKQFIHIPAEPPAIVDNNRPPSSWPSKGKIDLQGLEIRYRPNLPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDNEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFVECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPTKLMDTNSSFSKLVAEYWSSCRKNSLTNISSQQQ 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00453 1457 Pfam ABC transporter 1222 1370 IPR003439 GO:0005524
Tsu08g00453 1457 Pfam ABC transporter transmembrane region 284 543 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00453 1457 Pfam ABC transporter transmembrane region 893 1154 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00453 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1207 1439 IPR003439 GO:0005524
Tsu08g00453 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1438 IPR027417 -
Tsu08g00453 1457 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 61 1448 - -
Tsu08g00453 1457 CDD ABC_6TM_ABCC_D2 887 1180 IPR044726 GO:0140359
Tsu08g00453 1457 CDD ABC_6TM_ABCC_D1 283 571 IPR044746 GO:0140359
Tsu08g00453 1457 Gene3D ABC transporter type 1, transmembrane domain 858 1186 IPR036640 GO:0005524|GO:0016021
Tsu08g00453 1457 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Tsu08g00453 1457 CDD ABCC_MRP_domain2 1203 1423 - -
Tsu08g00453 1457 Gene3D - 604 851 IPR027417 -
Tsu08g00453 1457 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 61 1448 - -
Tsu08g00453 1457 Gene3D ABC transporter type 1, transmembrane domain 252 586 IPR036640 GO:0005524|GO:0016021
Tsu08g00453 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 893 1154 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00453 1457 Gene3D - 1188 1439 IPR027417 -
Tsu08g00453 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 563 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00453 1457 SUPERFAMILY ABC transporter transmembrane region 876 1187 IPR036640 GO:0005524|GO:0016021
Tsu08g00453 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Tsu08g00453 1457 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524
Tsu08g00453 1457 SUPERFAMILY ABC transporter transmembrane region 270 577 IPR036640 GO:0005524|GO:0016021
Tsu08g00453 1457 CDD ABCC_MRP_domain1 597 797 - -
Tsu08g00453 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 818 IPR027417 -
Tsu08g00453 1457 SMART AAA_5 1231 1423 IPR003593 -
Tsu08g00453 1457 SMART AAA_5 624 797 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00453 Tsu-Chr8 4443228 4449224 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00453 584 849 Calmodulin-binding Proteins AT2G36910 24.315 1.12e-19 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00453 - - gmx:100784827 2253.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00453 08 4443228 4449224 Tsu08g00453 08 4443228 4449224 ECH