Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00433 ATGATTACAGTGAGTGTTAAGTGGCAAAAGGAACTTTTCAAAGATGTAGAAATTGATACTAGCCAGCCCCCTTATGTTTTTAAGTGCCAATTGTTTGACCTGACCGGTGTGCCTCCTGAAAGACAAAAGATTATGGTCAAGGGTGGTCTTTTAAAGGATGATGCTGATTGGGAAAAGTTAGGAGTGAAAGCGGGTCAAAAGCTAATGATGATGGGAACAGCTGATGAAATTATTAAGTCTCCGGAGAAGGGCACTGTTTTTGTTGAAGATCTTCCCGAAGAAGAACAAGTAGCTGCTGTTGGACATACTGCTGGTCTTTTCAATTTGGGAAATACCTGCTATATGAACTCAACATTGCAATGCCTCCATTCTGTGCCAGAATTGAAGTCAGCTTTGATTGATTATTCACATTCAGGACGGAACAATGATGTGGATCAGTCATCTCATTTGCTGACTGTTGCAACCCGTGACTTATTCAGTGAGCTTGATAAAAGTGTAAAGCCTGTGGCACCTATGCAATTTTGGATGGTATTGCGTAAAAAGTATCCTCAATTTGGCCAGCTACATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAAATTCTATACACACTTTCACAATCTCTAAGATCCTCTGGATCTAGTGAAAATACTGATGCTGTGAAGGCTCTTTTTGGCATAGAACTTAATAGCAGGATTTATTGCCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAATCTGTTTATTCACTTAAATGCCACATATCGCAGGAAGTAAACCATTTGCATGAAGGACTAAAACATGGTTTAAAATCAGAGTTGGAGAAGGCTTCTGCTGTTTTGGGTCGTAGTGCTATCTACCTGAAGGAATCACGCATCAATGCCCTGCCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCAAACCAAAAGGCTAAGATTTTGCGAAAAGTAGATTATCCTCTGGAGTTGGATATTTATGATCTTTGTTCTGATGAGCTTAAAAAGAAATTGGAAGCTCCTAGACAGTTCCTAAGAAATGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCCCAAGGAAAATGATGTAAAAATGTCTGATGCTGAGGGATCGTCAAATGGTGAGCCATCTGTTGCTCCAATGGAGGAAGGTGAAAAAGAAACACAAATGACTGGAGTTTATGATTTAGTTGCTGTATTGACCCACAAGGGCAGGAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAACCCGAAACCTAGACTACAAGACGACATCACTAGACTATCTGGCGGAGGTGATTGGCATATGGCATATATAATCATGTACAAGGCTCGTGTTGTATCTCTGTAA 1437 0.4043 MITVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDADWEKLGVKAGQKLMMMGTADEIIKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIDYSHSGRNNDVDQSSHLLTVATRDLFSELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQILYTLSQSLRSSGSSENTDAVKALFGIELNSRIYCQESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASAVLGRSAIYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSDELKKKLEAPRQFLRNEEGKKLGLKVNEKSSVPKENDVKMSDAEGSSNGEPSVAPMEEGEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPRLQDDITRLSGGGDWHMAYIIMYKARVVSL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00433 478 SMART ubq_7 2 73 IPR000626 GO:0005515
Tsu08g00433 478 CDD Peptidase_C19A 105 472 - -
Tsu08g00433 478 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 477 - -
Tsu08g00433 478 SUPERFAMILY Cysteine proteinases 102 472 IPR038765 -
Tsu08g00433 478 MobiDBLite consensus disorder prediction 365 381 - -
Tsu08g00433 478 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Tsu08g00433 478 Gene3D - 1 73 - -
Tsu08g00433 478 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 409 427 IPR018200 GO:0004843|GO:0006511
Tsu08g00433 478 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 477 IPR044635 GO:0004843|GO:0016579|GO:0043161
Tsu08g00433 478 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 474 IPR028889 -
Tsu08g00433 478 CDD Ubl_USP14_like 1 75 - -
Tsu08g00433 478 Gene3D Cysteine proteinases 97 477 - -
Tsu08g00433 478 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Tsu08g00433 478 MobiDBLite consensus disorder prediction 365 402 - -
Tsu08g00433 478 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Tsu08g00433 478 Pfam Ubiquitin carboxyl-terminal hydrolase 105 471 IPR001394 GO:0004843|GO:0016579
Tsu08g00433 478 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Tsu08g00433 478 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00433 Tsu-Chr8 4298667 4308620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00433 104 335 Miscellaneous Gene Families AT2G24640 23.482 5.73e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00433 K11843 - gmx:100802120 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00433 08 4298667 4308620 Tsu08g00433 08 4298667 4308620 ECH