Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00422 ATGTCTTCTTCCTTCAAATTgaaatgttttcattttttcatcatcatattcatattaAATGTCTTTGCTGCAGTAACCATTTTTTCATCATCAACAGATGATGATTCTTCATTCAACAACTTTCTAGATATTGCCAAGAGTCCTAAAGTTTTTGATTGGATGATTAATATCAGAAGAAAGATTCATGAGAATCCAGAATTAGCTTATCAAGAATTTGAAACAAGTGAACTGATAAGATCAGAATTGGATAAAATGGGTATACCTTATAAACATCCAGTTGCAATCACTGGTGTCATTGGTTTCATAGGAACTGGTTTCTCTCCTTTTGTTGCTTTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAATGGAAACATAAGAGTAAAGTACCTGGAAAGATGCACGCATGCGGTCATGATGCTCATGTTACTATGTTACTTGGTGCTGCAAAGATTCTTAAACAACATGAAAAAGAGATACAAGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAAGAGGTGGTGGGGCTAAGAAAATTTTAGATGCTGGAGCATTAGAAAATGTTACTGCTATATTTGGGTTGCATATTGCTCCTGATTTACCAATAGGTGAAGTGTCCTCAAAGTCTGGTCCAATATTGGCAGGAAGTGGCCGCTTTGAAGCAAAAATAAGCGGAAAAGGAGGTCATGCAGCAATCCCTCAACACTCTATTGATCCTATATTGGCAGCTTCCAATGTGATTATTAGCTTACAACAACTTATTTCTCGTGAGGCCGATCCTCTAGACTCCCAAGTTGTCACGATTGCCAAGTTCCATGGTGGTAGTGCGTTCAATGTTATTCCGGATTATGTCACAATTGGTGGCACTTTTCGAGCCTTTTCTAAACAAAGCTTCAATCAACTGAGACAACGGATTGAGCAGGTTATCGTCGGACAAGCTTCTGTGCATAGGTGCAATGCAGCTGTGGACTTCCTTGATGAAGTAAAACCTGCTTATCCTCCAACTGTAAACAACGGCGACTTGCATGAACATTTTGTGAATGTTGCAGTAAATATGTTTGGTATCAATAAAGTTAGTGTCATGACACCAACCATGGGAGCTGAAGATTTTTCATTCTATCAAGAGGTCATACCTGGTTACCTTTTCTTCCTCGGAATGAAGAATGCCGAACATGAACAATTTGTGCCATCATTACACTCACCTTATCTGAAAATCAATGAAGATGGACTGCCTTATGGAGCTGCACTTCATGCATCATTAGCAGCTAATTATCTTCTAAAACATCAGCAGGATATTGTACCTGGTGTTGAGGGAAAATATCATGATGAATTATAA 1350 0.38 MSSSFKLKCFHFFIIIFILNVFAAVTIFSSSTDDDSSFNNFLDIAKSPKVFDWMINIRRKIHENPELAYQEFETSELIRSELDKMGIPYKHPVAITGVIGFIGTGFSPFVALRADMDALPMQEMVEWKHKSKVPGKMHACGHDAHVTMLLGAAKILKQHEKEIQGTVVLVFQPAEERGGGAKKILDAGALENVTAIFGLHIAPDLPIGEVSSKSGPILAGSGRFEAKISGKGGHAAIPQHSIDPILAASNVIISLQQLISREADPLDSQVVTIAKFHGGSAFNVIPDYVTIGGTFRAFSKQSFNQLRQRIEQVIVGQASVHRCNAAVDFLDEVKPAYPPTVNNGDLHEHFVNVAVNMFGINKVSVMTPTMGAEDFSFYQEVIPGYLFFLGMKNAEHEQFVPSLHSPYLKINEDGLPYGAALHASLAANYLLKHQQDIVPGVEGKYHDEL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00422 449 SUPERFAMILY Zn-dependent exopeptidases 49 432 - -
Tsu08g00422 449 TIGRFAM amidohydrolases: amidohydrolase 54 417 IPR017439 GO:0016787
Tsu08g00422 449 Gene3D - 219 337 - -
Tsu08g00422 449 SUPERFAMILY Bacterial exopeptidase dimerisation domain 220 329 IPR036264 -
Tsu08g00422 449 Pfam Peptidase dimerisation domain 220 314 IPR011650 -
Tsu08g00422 449 PIRSF Amidohydrol_AmhX 41 434 IPR017439 GO:0016787
Tsu08g00422 449 Pfam Peptidase family M20/M25/M40 111 427 IPR002933 GO:0016787
Tsu08g00422 449 PANTHER PEPTIDASE M20 FAMILY MEMBER 10 449 IPR017439 GO:0016787
Tsu08g00422 449 Gene3D Zn peptidases 54 414 - -
Tsu08g00422 449 CDD M20_IAA_Hyd 54 430 IPR044757 GO:0009850|GO:0016787
Tsu08g00422 449 PANTHER AUXIN CONJUGATE HYDROLASE 10 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00422 Tsu-Chr8 4216654 4222232 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00422 K21604 K14664 gmx:100789077 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00422 08 4216654 4222232 Tsu08g00422 08 4216654 4222232 ECH