Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00420 ATGTCTTGTTCCTTCCAATGTTTCCATTTTTtcatcatcatattcatattaCATGTTTTTACTACAACACcaatttcatcatcaacaacagaTGATTCTTCATTCAACAATTTTCTTGGCAGTGCCAAGAGTCCTGAGGTTTTTGATTGGATGATCAATATCAGAAGGAAAATTCATGAGAATCCAGAATTGGGTTATCAAGAATTTGAAACAAGTGAACTGATAAGATCAGAATTGGATAAAATGGGCATACCTTATAAACATCCAGTTGCAATCACTGGTATCATTGGTTTCATAGGAACTGGATTGCCTCCTTTTGTTGCTATAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAATGGGAGCATAAGAGTAAAGTTCCTGGGAAGATGCACGCGTGCGGTCATGATGCTCATGTTACTATGTTACTTGGTGCTGCAAAGATTCTTAAACAGCATGAAAAAGAGATACAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGCGGAGGGGCTAAGAAAATTTTAGACACTGGAGCATTAGAAAATGTTACCGCTATATTTGGATTACATATTGCTCCTGAATTACCAATAGGTGAAGTGGCCTCTAAGTCTGGTCCATTATTGGCAGGAAGTGGCTTCTTTGAAGCTAAAATAAGTGGAAAAGGAGGTCATGCAGCTATTCCTCAACAGTCTATAGACCCTATATTGGCAGCTTCCAATGTGATTCTTAGCTTACAACACCTTGTTTCTCGCGAGGCTGATCCTTTAGACTCACAGGTTGTGACGATTGCAACGTGCCAAGGAGGTAGTGCATTCAATGTTATTCCGGATTCTGTCACAATTGGTGGCACCTTCCGAGCCTTTTCTAAACAAAGCTTCAACCAACTGAAACAGCGGATTGAGCAGGTTATCATCGGACAAGCTGCTGTGCAAAGGTGCAATGCAACTGTGGACTTCCTTGATGGAGTGAAACCTTTCTATCCTCCAACTGTAAACAACGGCAACTTGCATGAACATTTTGTAAATGTGGCAGTGAATATGCTTGGTATCAATAAAGTAGAAAGTGCCATGACTCCGTTCATGGGAGCTGAAGACTTTTCATTCTATCAAGAGGTCATACCTGGTTACTTTTTCTTCCTTGGAATGAAGAATGCCGAACATGAACGGTTTGTGCCATCATTACATTCACCTTATCTCAAAATCAATGAAGACGGACTCCCTTACGGAGCTGCACTTCATGCATCATTAGCTGCTAGTTATCTTCTAAAACATCAGCAGGATATTGTACCTGGTGTTGAGAGAAAATATCGCGATGAATTATAA 1344 0.3966 MSCSFQCFHFFIIIFILHVFTTTPISSSTTDDSSFNNFLGSAKSPEVFDWMINIRRKIHENPELGYQEFETSELIRSELDKMGIPYKHPVAITGIIGFIGTGLPPFVAIRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGGGAKKILDTGALENVTAIFGLHIAPELPIGEVASKSGPLLAGSGFFEAKISGKGGHAAIPQQSIDPILAASNVILSLQHLVSREADPLDSQVVTIATCQGGSAFNVIPDSVTIGGTFRAFSKQSFNQLKQRIEQVIIGQAAVQRCNATVDFLDGVKPFYPPTVNNGNLHEHFVNVAVNMLGINKVESAMTPFMGAEDFSFYQEVIPGYFFFLGMKNAEHERFVPSLHSPYLKINEDGLPYGAALHASLAASYLLKHQQDIVPGVERKYRDEL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00420 447 Gene3D Zn peptidases 51 412 - -
Tsu08g00420 447 CDD M20_IAA_Hyd 51 416 IPR044757 GO:0009850|GO:0016787
Tsu08g00420 447 Pfam Peptidase family M20/M25/M40 108 424 IPR002933 GO:0016787
Tsu08g00420 447 TIGRFAM amidohydrolases: amidohydrolase 51 415 IPR017439 GO:0016787
Tsu08g00420 447 Gene3D - 216 334 - -
Tsu08g00420 447 PANTHER AUXIN CONJUGATE HYDROLASE 8 447 - -
Tsu08g00420 447 SUPERFAMILY Zn-dependent exopeptidases 46 430 - -
Tsu08g00420 447 Pfam Peptidase dimerisation domain 217 311 IPR011650 -
Tsu08g00420 447 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 335 IPR036264 -
Tsu08g00420 447 PANTHER PEPTIDASE M20 FAMILY MEMBER 8 447 IPR017439 GO:0016787
Tsu08g00420 447 PIRSF Amidohydrol_AmhX 39 432 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00420 Tsu-Chr8 4204475 4207936 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00420 K21604 K14664 gmx:100789077 669.848