Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g00410 | ATGAAAAGAAACATTCGATTTCATcaattttcaacatcatcaacaatccaatcacacaaaaaaacacaaacgtTCCCAAAAACACACTCTCTTTATTATCTACCTATACCTCATCGAACAATTCCACAACCAAAAGGACAAGATTTAGatttcataaatattttccACAGTCACTTAATCCACTCTCAATGGGAAAAACTCACTCCTTTATCAAAAACCATAACCCCATTTAGAATCCAACACATTCTCTTAAAACTCCAAAACGACGACGTTTTATCTCTCAAATTCTTCAATTGGGTTCATACCCATAACCCTAATTCTCATACCCTTCAAACCCATTCATTCCTTCTTCACATTCTCACTaaaaatcgaaactttaaaACAGCACAATCAATATTCAGCAAAATCATAACCACCCATTTGAATAATCTCTTTGAAGAATTGCTTCATTCATACACACTTTGCAATTCTTCACCACTTGTTTTTGATACCCTTTTCATGACTTTAGCTCGTATGAACAAGCTGAGAAATGCGACCGATATGTTCGTTAAAATGAAGGAATATGGTTTCTTTCCAACTATTGAATCTTGTAATGTGTTTCTTAGTTCAATGCTTTACCTTAAAAGACCAGAATTGGTTTTATTGTTTTATAGTCAAATGAAGAATAATTGTATTTCACCTAATGTTTATACTCTTAATATGGTTGTTTCTGCTTATTGTAAGTTAGGTGAATTGAATAAAGCTTCTGAGGttttggagaagatgaagaatatggGTTTGTGTCCTAATGTTGTTACTTACAATGCTTTGATTTCTGGTTATTGTAGTAAGGGGTTACTTGGTTTGGCTTTAAAGGTTAAAAATTTGATGATGGGGAATAATGGGGTGTTTCCTAATGTGATTACTTTTAATACTCTTATTAATGGGTTTTGTAAAGAGGGAAAATTGCATGAAGCTAATAGGGTTTTTAGTGAGATGAAGTTGGCTAATGTGACTCCTAATGTTGTGACATATAATACTTTGATTAATGGGTTTGGTCAAATTGGTAATAGTGAAATGGGGATTAGGCTTTTTGAGGAGATGGAGAGGAATAAGGTGAAAGCTGATATTTTGACTTATAATGGTTTGATTTTGGGACTTTGTAAAGAAGGGAAAACTAAGAAAGCTGCTTATATGGTTAAGGATCTTGATAAGGAGAATTTGGTACCAAATGCTTCTACGTTTTCTGCTCTTATTGCTGGACAGTGTGTGAGGAACAACTCTGAACGCGCTTTTCTTGTTTATAGAAGCATGGTAAGGAGTGGTTTTAGTCCAAATGAGAATACTTTTCAGATGTTGGTTTCGGCTTTTTGTAAGAATGACGATTTTGATGGAGCTGTGCAAGTTTTGAGGGACATGATGGACAGATTCATGACTCCTGATTCTAGTATTTTATCTGAGGTTTGTAGTGGACTTTGCAGGTGTGGGAGAAAACAGCTTGCATTGAAGCTGTGTAGTGAGATGGAAGCTAAGCGTTTATTGCCGCAAGGTTTTGACAGAGAAAAAATAGTCATCACTAGTCATGAAAATGAGACAAGCAATTTGACTTGTTAG | 1593 | 0.3283 | MKRNIRFHQFSTSSTIQSHKKTQTFPKTHSLYYLPIPHRTIPQPKGQDLDFINIFHSHLIHSQWEKLTPLSKTITPFRIQHILLKLQNDDVLSLKFFNWVHTHNPNSHTLQTHSFLLHILTKNRNFKTAQSIFSKIITTHLNNLFEELLHSYTLCNSSPLVFDTLFMTLARMNKLRNATDMFVKMKEYGFFPTIESCNVFLSSMLYLKRPELVLLFYSQMKNNCISPNVYTLNMVVSAYCKLGELNKASEVLEKMKNMGLCPNVVTYNALISGYCSKGLLGLALKVKNLMMGNNGVFPNVITFNTLINGFCKEGKLHEANRVFSEMKLANVTPNVVTYNTLINGFGQIGNSEMGIRLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKDLDKENLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTFQMLVSAFCKNDDFDGAVQVLRDMMDRFMTPDSSILSEVCSGLCRCGRKQLALKLCSEMEAKRLLPQGFDREKIVITSHENETSNLTC | 530 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 299 | 333 | IPR002885 | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 334 | 368 | IPR002885 | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 158 | 192 | IPR002885 | - | |
| Tsu08g00410 | 530 | Pfam | PPR repeat | 163 | 190 | IPR002885 | - | |
| Tsu08g00410 | 530 | Pfam | PPR repeat | 483 | 504 | IPR002885 | - | |
| Tsu08g00410 | 530 | Pfam | PPR repeat family | 298 | 345 | IPR002885 | - | |
| Tsu08g00410 | 530 | Pfam | PPR repeat family | 369 | 416 | IPR002885 | - | |
| Tsu08g00410 | 530 | Pfam | PPR repeat family | 227 | 276 | IPR002885 | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 404 | 438 | IPR002885 | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 263 | 298 | IPR002885 | - | |
| Tsu08g00410 | 530 | Pfam | PPR repeat | 435 | 466 | IPR002885 | - | |
| Tsu08g00410 | 530 | Gene3D | Tetratricopeptide repeat domain | 330 | 395 | IPR011990 | GO:0005515 | |
| Tsu08g00410 | 530 | Gene3D | Tetratricopeptide repeat domain | 256 | 329 | IPR011990 | GO:0005515 | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 474 | 508 | IPR002885 | - | |
| Tsu08g00410 | 530 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 4 | 525 | - | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 439 | 473 | IPR002885 | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 228 | 262 | IPR002885 | - | |
| Tsu08g00410 | 530 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 369 | 403 | IPR002885 | - | |
| Tsu08g00410 | 530 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 4 | 525 | - | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 372 | 405 | IPR002885 | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 407 | 440 | IPR002885 | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 301 | 335 | IPR002885 | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 265 | 300 | IPR002885 | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 336 | 369 | IPR002885 | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 442 | 474 | IPR002885 | - | |
| Tsu08g00410 | 530 | TIGRFAM | PPR: pentatricopeptide repeat domain | 230 | 264 | IPR002885 | - | |
| Tsu08g00410 | 530 | Gene3D | Tetratricopeptide repeat domain | 87 | 255 | IPR011990 | GO:0005515 | |
| Tsu08g00410 | 530 | Gene3D | Tetratricopeptide repeat domain | 396 | 522 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00410 | 161 | 522 | Glycosyltransferase | AT1G05670 | 30.563 | 6.31e-56 | 198 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g00410 | - | - | adu:107464028 | 724.931 |