Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00393 ATGAAGACActtcttttcatttttgtaaCACTCTTAGCAACATGTCATGGTGATGTTCTAAACCATGTTCATGAACATggttcaaacttcaaaatttTCCCACTTAGAATGAAAACTGGTTCAGGTGGACACTACATTCCAGAAGTGTCATGTGCTAGTTGGAGACTTGGTGTTGAAGCACACAACATCATTGATTGGAAAACTGTTCCAATTGAGTGTGAAAATTATGTTGGAAACTATGTCTTAGGTGACCAATATAGAGCTGACTCTAAATTTGTTAACCGTGAAGGTTTTTATTATGCTAGGACTGTCAATGTAGCTGATGATGGTAAAGACATTTGGGTGTTTGACATTGATGAAACTACTCTATCTAATCTTCCTTATTATGCTAAACATGGATTTGGGGTGAATCCATACAATGACACATTGTTCAATGAATGGGTTGATCTTGGAGCAGCACCAGCACTACCAGAGACTCAAAAATTCTACAACAAATTATTGAATCTTGGTATCAAGATTGTTTTCTTAACAGGAAGACCACTTAAACAAAGGGACATTACTGCTAAGAACTTGAAAAAAGTTGGCTATCACACATGGGAAAAGCTCATCTTAAAGGACACAACATTATATCATGGTAAAACAGCAGTTACATACAAATCATCTGAGAGAAAGAAGCTAGAGGAAGAAGGTTACAGAATCATTGGAAACATTGGTGATCAATGGAGTGATATTCTTGGAACAAACACTGGAAGTAGGACTTTCAAGCTCCCTGATCCTCTCTATTACATTGCTTAA 795 0.3535 MKTLLFIFVTLLATCHGDVLNHVHEHGSNFKIFPLRMKTGSGGHYIPEVSCASWRLGVEAHNIIDWKTVPIECENYVGNYVLGDQYRADSKFVNREGFYYARTVNVADDGKDIWVFDIDETTLSNLPYYAKHGFGVNPYNDTLFNEWVDLGAAPALPETQKFYNKLLNLGIKIVFLTGRPLKQRDITAKNLKKVGYHTWEKLILKDTTLYHGKTAVTYKSSERKKLEEEGYRIIGNIGDQWSDILGTNTGSRTFKLPDPLYYIA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00393 264 Gene3D - 46 264 IPR023214 -
Tsu08g00393 264 SUPERFAMILY HAD-like 105 259 IPR036412 -
Tsu08g00393 264 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 43 263 IPR005519 -
Tsu08g00393 264 PIRSF VSP 1 264 IPR014403 -
Tsu08g00393 264 TIGRFAM plant-AP: plant acid phosphatase 48 264 IPR010028 GO:0003993
Tsu08g00393 264 CDD HAD_VSP 77 263 - -
Tsu08g00393 264 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 4 263 - -
Tsu08g00393 264 PANTHER VEGETATIVE STORAGE PROTEIN 1-RELATED 4 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00393 Tsu-Chr8 3834903 3838603 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00393 - - gmx:547669 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00393 08 3834903 3838603 Tsu08g00393 08 3834903 3838603 ECH